Gene detail

Detail information of MD12G1025200 Annotation

Gene ID	Annotation
MD12G1025200	RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1025200	mRNA	Chr12	2693029	2697775	-

Sequences

CDS:

MD12G1025200

CGACACTCAAACCTCAAAAGCGATTCCCTTTTCCTTTTCGTTTTCGTTCGTTGGGTTCGAGCTCAGTAAAAAGCTCAGAGCACCGAGTTAGGGTTTCCAAATTGAACAAATTGGTTCCGCAGCTGAATTAATTGTTCGAATCACCGAACCAGATAGATAAACAATTACACCATCCATTTACTGTCAAATGTCGATATCTAAATATTCGAGAAATTCACTGCTTCATTGTTTGTTTCGCCTGCTGAGCATCACCATCCCCTTGATAAATCATGCAGAATTCTTCTGTTGCTGTCTCTTACTATTTTTACAATATAATGACCCCTTAATTGAAAATCATTGACTTTGCAAGTCCTCGAATCCATACCTCATGGCACAGATTCTTTCGAAATTCTTACCCTGCAACTTCGTTTGGCCTCTCATGTTGTTTCCACCTTTCCATATCTGTATTCTTTCTTCTGGGCCTCTGTGCTTTCTTCACAGTTGCCTTGCAAGCTTTTCTTTCTAGATATATAAGATGCCGAAAACAAGGACAAATGTTTCTGGGGATGCATCTGAAAGGCTTGTAGAATCTGACGAGCGGGTGGATCTGGAGGGAGACAATGATCCCGAGGAAACAATAGAAGAGGAGGTTGAGTATGAAGAAGTAGAGGAGGAGGAGGAAGTCGAGGTGGAAGAAGAGGAGGAAGAGGAAGAAGAAGATCCTGAAGAGGAGGGTGAGGAAGAGGATGACAACAAGCGACCTGCTACAAAATCTAATGCACAGAAAAGCTCAGATGGTGATGAAGAGATGATTGTTGCTGATGCGGAGGACGAGGAGGAGAAAAGGAAGCATGTTGAGCTTCTTGCTCGTCCTCCGCATGGGTCAGAGGTGTATCTTGGTGGCATTCCTCATGATGCATCCGAAGTGGATTTGAGGGGATTTTGTGAATCTATTGGGGAAGTGACTGAGGTTAGAATAATGAAGGGAAAAGATTCTGGTGAGGCCAAAGGCTATGCTTTTGTAACCTTCAGAAACAAAGAATTGGCCTCTAAGGCAATTGAGGAACTGAATAATTCGGAGTTAAAGGGAAAAAGGATTAAATGTTCGACATCTCAAGCAAAGCATCGGTTGTTCATCGGAAATGTTCCAAGAAGTTGGGGAGAGGAAGATATGAAGAAGGCTGTAACAGATATTGGACCAGGAGTCATTTCTGTGGAATTGTTGAAGGACCCACAGAACTCCAGCCGAAATCGGGGATTTGCGTTCATCGAGTATTATAATCATGCCTGTGCAGAATACTCAAGACAAAAGATGTCAACCCCAAAATTTAAGCTTGACACCAATGCTCCAACTGTTAGCTGGGCTGATCCTAGAAATACAGAATCCTCTGCTGCTTCTCAGGTTAGGGCAGTGTATGTCAAGAATTTACCAAAAGACATTACTCAGGATCAGCTGAAGGATCTGTTTGAACATCATGGAAAGATCACAAAGGTGGTTCTCCCACCTGCAAAAGCGGGACAGGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCGGAAAGGGCATGTGCCATGAAGGCATTGAAGAACACTGAAAAATATGAAATTGATGGTCAAGTTTTGGAGTGTTCTCTTGCAAAACCACAATCAGATCAGAAGTCTTCTGGATCATCAACTCAACAACGGTCAGCCTTACTTCCGACCTACCCACCACGTTTTGGTTATGGCATGGTAGGGGGTAGTCCTTATGGTGGTGGCTTAGGTGCTGGATATGGTGGTCCGGGAATTGCGCAACCACTGATATACGGTAGGGGACCAACTCCTGCTGGCATGGCAATGATGCCTATGCTTTTACCTGACGGAAGGATTGGATATGTCCTGCAACAGCCGGGAGTACAACCACAGATGCCTCCACTGCAATCCCGAGGTGGAAGAAGTGGTGGTGGTGGCAGCTCAAGTGGTGGAAGGCAAAGCGGTGAGAGCAGTCGTGGCCGCATTCGCTACAACCCGTATTAATTTGTGAGTTCTGGCTCTTGTTTCGAGAAAACGGAACGAAGATGGCATCTTGGATTGACAATCAGTACTTTGGGCGTATGAAGGAGTGCACACATTTGTGGTTGTGCAGTTGGTTTTAAGTTACAAAATCAAATGTAGTTTGATTCATGCCGATGCCCGTGTAGTATGCTTAAACTAAAACAAGGTTTAGTTAAACTATGAATTTTGTGCCGTTGAATTTCGTTGCTTTTCCGTACGATTCAAGCTCTTCTTCATCCCGAATTTTGTCGTAAAAATGTAATCTCAGCAGCAGTTATGGAAAAGAAAAAAATCATAGCCGAAAAGTCGGTGT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_sc0002414.1_g000043.1	1	-
Fragaria vesca	mrna30320.1	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Vitis vinifera	GSVIVT01036119001	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Solanum lycopersicum	Solyc09g009890.2.1	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Solanum lycopersicum	Solyc10g009220.2.1	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Populus trichocarpa	Potri.006G212400.1	1	RNA-binding (RRM/RBD/RNP motifs) family protein
Nicotiana benthamiana	Niben101Scf14591g00002.1	1	Polyadenylate-binding protein 1
Nicotiana benthamiana	Niben101Scf04329g05020.1	1	RNA-binding protein Musashi homolog 1
Oryza sativa	LOC_Os12g04180.1	1	"RNA recognition motif containing protein, expressed"
Oryza sativa	LOC_Os11g04390.1	0.946	"RNA recognition motif containing protein, expressed"
Zea mays	GRMZM2G075942_P01	1	-
Zea mays	GRMZM2G101867_P01	1	Putative

Gene Ontology

GO term	Description	Category
GO:0000166	nucleotide binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function

KEGG

KO	Description	Enzyme
K13161	heterogeneous nuclear ribonucleoprotein R	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.18	RRM_1	119	189	8.10E-18
PF00076.18	RRM_1	199	264	2.00E-08
PF00076.18	RRM_1	293	362	1.90E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.64528
SRR5252888	dormant buds	no	dormant buds(0 month)	15.2114
SRR5252889	dormant buds	no	dormant buds(0 month)	14.8265
SRR5252886	dormant buds	no	dormant buds(1 months)	15.9915
SRR5252887	dormant buds	no	dormant buds(1 months)	9.39493
SRR5252884	dormant buds	no	dormant buds(2 months)	23.071
SRR5252882	dormant buds	no	dormant buds(3 months)	17.7701
SRR5252883	dormant buds	no	dormant buds(3 months)	12.1125
SRR5252880	dormant buds	no	dormant buds(4 months)	25.8097
SRR5252881	dormant buds	no	dormant buds(4 months)	24.1663
SRR5252878	bud break	no	bud break	11.8013
SRR5252879	bud break	no	bud break	10.2523
SRR3744766	flower	no	mature	6.28574
SRR3744767	flower	no	mature	7.08572
SRR3744768	flower	no	mature	7.04254
SRR6308190	stigmas	no	open flowers	4.52902
SRR6308181	styles	no	open flowers	4.7304
SRR6308188	filaments	no	open flowers	4.36471
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.3753
SRR6308192	pollen	no	open flowers	18.2858
SRR6308191	petals	no	open flowers	5.60183
SRR6308194	sepals	no	open flowers	4.9115
SRR6308193	receptacles	no	open flowers	6.95834
SRR6308189	ovaries	no	open flowers	5.95028
SRR3384922	fruit	no	1 week after full bloom	10.0164
SRR3384921	fruit	no	2 week after full bloom	11.2636
SRR3384920	fruit	no	3 week after full bloom	4.04807
SRR3384919	fruit	no	4 week after full bloom	6.1707
SRR3384923	fruit	no	5 week after full bloom	4.47531
SRR3384918	fruit	no	6 week after full bloom	9.07307
SRR3384917	fruit	no	8 week after full bloom	6.95447
SRR3384916	fruit	no	10 week after full bloom	3.83654
SRR3384915	fruit	no	12 week after full bloom	4.13667
SRR3384914	fruit	no	14 week after full bloom	4.29601
SRR3384913	fruit	no	16 week after full bloom	6.27271
SRR3384912	fruit	no	18 week after full bloom	2.98255
SRR3384911	fruit	no	19 week after full bloom	6.13527
SRR3384910	fruit	no	20 week after full bloom	3.56597
SRR768128	whole fruit	no	25 days post anthesis	6.31389
SRR768129	whole fruit	no	35 days post anthesis	8.19849
SRR768130	whole fruit	no	60 days post anthesis	2.27783
SRR768131	whole fruit	no	87 days post anthesis	7.09467
SRR7343308	immature fruit flesh	no	immature	11.076
SRR7343309	immature fruit flesh	no	immature	7.7128
SRR6320494	ripe fruit flesh	no	mature	5.41663
SRR5405143	ripe fruit peel	no	mature	3.49295
SRR6320572	ripe fruit peel	no	mature	8.03486
SRR7403504	fruit	uninfected	mature	5.03609
SRR7403506	fruit	uninfected	mature	3.69899
SRR7403507	fruit	uninfected	mature	3.87377
SRR7403500	fruit	infected with penicillium expansum	mature	3.15232
SRR7403501	fruit	infected with penicillium expansum	mature	2.94259
SRR7403508	fruit	infected with penicillium expansum	mature	2.99157
SRR7403502	fruit	infected with penicillium expansum	mature	2.27086
SRR7403503	fruit	infected with penicillium expansum	mature	2.91213
SRR7403505	fruit	infected with penicillium expansum	mature	3.1243
SRR1613973	Central seeds	no	20DAPF	35.8728
SRR1613974	Central seeds	no	20DAPF	35.7098
SRR1613975	Central seeds	no	20DAPF	35.1785
SRR1613976	Lateral seeds	no	20DAPF	30.6196
SRR1613977	Lateral seeds	no	20DAPF	36.4764
SRR1613978	Lateral seeds	no	20DAPF	35.838
SRR3744786	stem	no	mature	15.7625
SRR3744787	stem	no	mature	13.542
SRR3744772	stem	no	mature	15.3406
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.19721
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.10451
SRR1089478	leaf	Virus-free	plantlets	1.90964
SRR1089477	leaf	ASGV-infected	plantlets	2.96257
SRR767660	leaf	uninfected	fully developed	2.28374
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.31312
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.76883
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.51777
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.72908
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.91151
SRR6308182	young leaf	no	immature leaves	18.7477
SRR3744769	leaf	no	mature	12.8035
SRR3744770	leaf	no	mature	11.5143
SRR3744771	leaf	no	mature	12.4221
SRR5405145	leaf	no	mature	8.48697
SRR6320561	leaf	no	mature	6.53749