Gene detail

Detail information of MD12G1036100 Annotation

Gene ID	Annotation
MD12G1036100	Ribosomal protein L1p/L10e family

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0337	plasmodesma elongation factor 1-alpha translation elongation factor activity translational elongation translation vacuole structural constituent of ribosome cytosolic large ribosomal subunit GTPase activity rRNA (adenine-N6 rRNA modification large subunit ribosomal protein L17e large subunit ribosomal protein L10Ae 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] small subunit ribosomal protein S5e calmodulin binding GTP binding nucleolus RNA binding cell fate specification

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1036100	mRNA	Chr12	3902360	3904898	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G110300.1.p	1	Ribosomal protein L1p/L10e family
Pyrus communis	PCP038640.1	1	-
Pyrus x bretschneideri	Pbr007599.1	1	-
Rosa multiflora	Rmu_sc0005978.1_g000001.1	1	-
Rubus occidentalis	Ro06_G14215	1	-
Fragaria vesca	mrna30294.1	1	Ribosomal protein L1p/L10e family
Vitis vinifera	GSVIVT01033841001	1	Ribosomal protein L1p/L10e family

Gene Ontology

GO term	Description	Category
GO:0015934	large ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0003723	RNA binding	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02865	large subunit ribosomal protein L10Ae	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00687.17	Ribosomal_L1	19	212	1.40E-48

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	269.088
SRR5252888	dormant buds	no	dormant buds(0 month)	84.4382
SRR5252889	dormant buds	no	dormant buds(0 month)	87.488
SRR5252886	dormant buds	no	dormant buds(1 months)	71.5079
SRR5252887	dormant buds	no	dormant buds(1 months)	73.753
SRR5252884	dormant buds	no	dormant buds(2 months)	73.3099
SRR5252882	dormant buds	no	dormant buds(3 months)	86.6195
SRR5252883	dormant buds	no	dormant buds(3 months)	84.901
SRR5252880	dormant buds	no	dormant buds(4 months)	103.966
SRR5252881	dormant buds	no	dormant buds(4 months)	112.609
SRR5252878	bud break	no	bud break	86.2467
SRR5252879	bud break	no	bud break	176.13
SRR3744766	flower	no	mature	41.5461
SRR3744767	flower	no	mature	38.3926
SRR3744768	flower	no	mature	40.2089
SRR6308190	stigmas	no	open flowers	41.0374
SRR6308181	styles	no	open flowers	59.3884
SRR6308188	filaments	no	open flowers	146.037
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	46.4626
SRR6308192	pollen	no	open flowers	43.1348
SRR6308191	petals	no	open flowers	124.427
SRR6308194	sepals	no	open flowers	83.6437
SRR6308193	receptacles	no	open flowers	138.346
SRR6308189	ovaries	no	open flowers	89.3947
SRR3384922	fruit	no	1 week after full bloom	184.959
SRR3384921	fruit	no	2 week after full bloom	159.743
SRR3384920	fruit	no	3 week after full bloom	119.856
SRR3384919	fruit	no	4 week after full bloom	135.58
SRR3384923	fruit	no	5 week after full bloom	96.3349
SRR3384918	fruit	no	6 week after full bloom	92.4856
SRR3384917	fruit	no	8 week after full bloom	77.7765
SRR3384916	fruit	no	10 week after full bloom	76.4851
SRR3384915	fruit	no	12 week after full bloom	87.1524
SRR3384914	fruit	no	14 week after full bloom	81.7552
SRR3384913	fruit	no	16 week after full bloom	89.7682
SRR3384912	fruit	no	18 week after full bloom	72.5175
SRR3384911	fruit	no	19 week after full bloom	80.8704
SRR3384910	fruit	no	20 week after full bloom	62.7023
SRR768128	whole fruit	no	25 days post anthesis	83.5637
SRR768129	whole fruit	no	35 days post anthesis	80.4725
SRR768130	whole fruit	no	60 days post anthesis	67.2363
SRR768131	whole fruit	no	87 days post anthesis	43.0909
SRR7343308	immature fruit flesh	no	immature	71.6599
SRR7343309	immature fruit flesh	no	immature	83.8516
SRR6320494	ripe fruit flesh	no	mature	34.1733
SRR5405143	ripe fruit peel	no	mature	61.4371
SRR6320572	ripe fruit peel	no	mature	44.9567
SRR7403504	fruit	uninfected	mature	40.4677
SRR7403506	fruit	uninfected	mature	41.6035
SRR7403507	fruit	uninfected	mature	38.1492
SRR7403500	fruit	infected with penicillium expansum	mature	64.1258
SRR7403501	fruit	infected with penicillium expansum	mature	86.1324
SRR7403508	fruit	infected with penicillium expansum	mature	72.4237
SRR7403502	fruit	infected with penicillium expansum	mature	57.352
SRR7403503	fruit	infected with penicillium expansum	mature	49.5152
SRR7403505	fruit	infected with penicillium expansum	mature	47.1547
SRR1613973	Central seeds	no	20DAPF	307.235
SRR1613974	Central seeds	no	20DAPF	302.78
SRR1613975	Central seeds	no	20DAPF	293.176
SRR1613976	Lateral seeds	no	20DAPF	283.378
SRR1613977	Lateral seeds	no	20DAPF	298.953
SRR1613978	Lateral seeds	no	20DAPF	304.381
SRR3744786	stem	no	mature	45.4586
SRR3744787	stem	no	mature	43.2926
SRR3744772	stem	no	mature	41.5178
SRX765691	seedling shoot apex	no	4-6 week old seedling	153.712
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	146.305
SRR1089478	leaf	Virus-free	plantlets	61.6299
SRR1089477	leaf	ASGV-infected	plantlets	55.3223
SRR767660	leaf	uninfected	fully developed	53.4545
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	34.5339
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	66.5341
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	108.329
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	22.9258
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	40.1701
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	63.8692
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	39.4276
SRR6308182	young leaf	no	immature leaves	281.264
SRR3744769	leaf	no	mature	36.6772
SRR3744770	leaf	no	mature	34.06
SRR3744771	leaf	no	mature	32.1494
SRR5405145	leaf	no	mature	29.2491
SRR6320561	leaf	no	mature	56.9591