Gene detail

Detail information of MD12G1058400 Annotation

Gene ID	Annotation
MD12G1058400	myb-like HTH transcriptional regulator family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1058400	mRNA	Chr12	6743591	6746221	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	G2-like

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP026011.1	1	-
Pyrus x bretschneideri	Pbr035841.1	1	-
Rosa multiflora	Rmu_sc0003684.1_g000001.1	1	-
Vitis vinifera	GSVIVT01033515001	1	myb-like HTH transcriptional regulator family protein
Solanum lycopersicum	Solyc10g078720.1.1	1	myb-like HTH transcriptional regulator family protein
Populus trichocarpa	Potri.006G191000.1	1	myb-like HTH transcriptional regulator family protein
Nicotiana benthamiana	Niben101Scf02214g00010.1	1	Myb family transcription factor APL
Nicotiana benthamiana	Niben101Scf03863g01004.1	0.842	Myb family transcription factor APL
Oryza sativa	LOC_Os04g56990.3	1	"Myb-like DNA-binding domain containing protein, putative,expressed"
Zea mays	GRMZM2G035370_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.27	Myb_DNA-binding	254	303	1.20E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.62786
SRR5252888	dormant buds	no	dormant buds(0 month)	0.129601
SRR5252889	dormant buds	no	dormant buds(0 month)	0.250226
SRR5252886	dormant buds	no	dormant buds(1 months)	0.109755
SRR5252887	dormant buds	no	dormant buds(1 months)	0.233296
SRR5252884	dormant buds	no	dormant buds(2 months)	0.186287
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0934178
SRR5252883	dormant buds	no	dormant buds(3 months)	0.407178
SRR5252880	dormant buds	no	dormant buds(4 months)	0.55939
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0517416
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.15446
SRR3744766	flower	no	mature	0.623269
SRR3744767	flower	no	mature	0.817534
SRR3744768	flower	no	mature	0.871555
SRR6308190	stigmas	no	open flowers	0.520746
SRR6308181	styles	no	open flowers	0.768096
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.24641
SRR6308194	sepals	no	open flowers	0.955194
SRR6308193	receptacles	no	open flowers	0.952256
SRR6308189	ovaries	no	open flowers	0.412809
SRR3384922	fruit	no	1 week after full bloom	0.174907
SRR3384921	fruit	no	2 week after full bloom	0.189325
SRR3384920	fruit	no	3 week after full bloom	0.625141
SRR3384919	fruit	no	4 week after full bloom	1.00107
SRR3384923	fruit	no	5 week after full bloom	1.68432
SRR3384918	fruit	no	6 week after full bloom	1.54891
SRR3384917	fruit	no	8 week after full bloom	2.05968
SRR3384916	fruit	no	10 week after full bloom	2.90504
SRR3384915	fruit	no	12 week after full bloom	2.03519
SRR3384914	fruit	no	14 week after full bloom	1.3159
SRR3384913	fruit	no	16 week after full bloom	1.29159
SRR3384912	fruit	no	18 week after full bloom	1.84237
SRR3384911	fruit	no	19 week after full bloom	0.744023
SRR3384910	fruit	no	20 week after full bloom	1.01946
SRR768128	whole fruit	no	25 days post anthesis	1.00071
SRR768129	whole fruit	no	35 days post anthesis	1.61948
SRR768130	whole fruit	no	60 days post anthesis	0.678802
SRR768131	whole fruit	no	87 days post anthesis	0.729914
SRR7343308	immature fruit flesh	no	immature	1.29126
SRR7343309	immature fruit flesh	no	immature	0.772951
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.340085
SRR7403506	fruit	uninfected	mature	0.0513214
SRR7403507	fruit	uninfected	mature	0.152339
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0391973
SRR1613974	Central seeds	no	20DAPF	0.0538589
SRR1613975	Central seeds	no	20DAPF	0.109683
SRR1613976	Lateral seeds	no	20DAPF	0.0384573
SRR1613977	Lateral seeds	no	20DAPF	0.0371874
SRR1613978	Lateral seeds	no	20DAPF	0.0227723
SRR3744786	stem	no	mature	1.10212
SRR3744787	stem	no	mature	0.81266
SRR3744772	stem	no	mature	0.691922
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.312425
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.346902
SRR1089478	leaf	Virus-free	plantlets	1.34654
SRR1089477	leaf	ASGV-infected	plantlets	1.3709
SRR767660	leaf	uninfected	fully developed	0.768432
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.309212
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.1119
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.716
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.08858
SRR6308182	young leaf	no	immature leaves	0.159966
SRR3744769	leaf	no	mature	0.594269
SRR3744770	leaf	no	mature	0.581595
SRR3744771	leaf	no	mature	0.763306
SRR5405145	leaf	no	mature	0.598863
SRR6320561	leaf	no	mature	0.772795