Gene detail

Detail information of MD12G1076900 Annotation

Gene ID	Annotation
MD12G1076900	Leucine-rich repeat protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0363	peptidoglycan binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1076900	mRNA	Chr12	9377022	9378361	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.12.4

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.13	Pkinase_Tyr	2	275	9.40E-29

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.17224
SRR5252888	dormant buds	no	dormant buds(0 month)	0.431119
SRR5252889	dormant buds	no	dormant buds(0 month)	1.41505
SRR5252886	dormant buds	no	dormant buds(1 months)	1.27785
SRR5252887	dormant buds	no	dormant buds(1 months)	0.38803
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	2.33066
SRR5252883	dormant buds	no	dormant buds(3 months)	0.253965
SRR5252880	dormant buds	no	dormant buds(4 months)	2.63615
SRR5252881	dormant buds	no	dormant buds(4 months)	3.52844
SRR5252878	bud break	no	bud break	4.01576
SRR5252879	bud break	no	bud break	7.19337
SRR3744766	flower	no	mature	2.78544
SRR3744767	flower	no	mature	3.04497
SRR3744768	flower	no	mature	2.81271
SRR6308190	stigmas	no	open flowers	2.69577
SRR6308181	styles	no	open flowers	4.5261
SRR6308188	filaments	no	open flowers	3.16805
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.489275
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.21666
SRR6308194	sepals	no	open flowers	0.262069
SRR6308193	receptacles	no	open flowers	6.58283
SRR6308189	ovaries	no	open flowers	4.15901
SRR3384922	fruit	no	1 week after full bloom	10.6923
SRR3384921	fruit	no	2 week after full bloom	12.8335
SRR3384920	fruit	no	3 week after full bloom	6.79392
SRR3384919	fruit	no	4 week after full bloom	8.19798
SRR3384923	fruit	no	5 week after full bloom	7.7353
SRR3384918	fruit	no	6 week after full bloom	6.03447
SRR3384917	fruit	no	8 week after full bloom	4.20927
SRR3384916	fruit	no	10 week after full bloom	3.17918
SRR3384915	fruit	no	12 week after full bloom	4.0625
SRR3384914	fruit	no	14 week after full bloom	1.45928
SRR3384913	fruit	no	16 week after full bloom	0.429696
SRR3384912	fruit	no	18 week after full bloom	0.483897
SRR3384911	fruit	no	19 week after full bloom	0.696171
SRR3384910	fruit	no	20 week after full bloom	0.242259
SRR768128	whole fruit	no	25 days post anthesis	7.77881
SRR768129	whole fruit	no	35 days post anthesis	24.4751
SRR768130	whole fruit	no	60 days post anthesis	11.2645
SRR768131	whole fruit	no	87 days post anthesis	4.60281
SRR7343308	immature fruit flesh	no	immature	6.87981
SRR7343309	immature fruit flesh	no	immature	7.29769
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0865738
SRR1613973	Central seeds	no	20DAPF	4.71882
SRR1613974	Central seeds	no	20DAPF	4.83317
SRR1613975	Central seeds	no	20DAPF	4.66391
SRR1613976	Lateral seeds	no	20DAPF	3.63159
SRR1613977	Lateral seeds	no	20DAPF	5.33526
SRR1613978	Lateral seeds	no	20DAPF	3.20677
SRR3744786	stem	no	mature	0.47206
SRR3744787	stem	no	mature	0.734227
SRR3744772	stem	no	mature	0.632432
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.8718
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.4029
SRR1089478	leaf	Virus-free	plantlets	4.46139
SRR1089477	leaf	ASGV-infected	plantlets	2.70363
SRR767660	leaf	uninfected	fully developed	1.6963
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.75063
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.639516
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.721046
SRR6308182	young leaf	no	immature leaves	8.07152
SRR3744769	leaf	no	mature	0.65383
SRR3744770	leaf	no	mature	0.544966
SRR3744771	leaf	no	mature	0.716427
SRR5405145	leaf	no	mature	0.497259
SRR6320561	leaf	no	mature	0