Gene detail

Detail information of MD12G1083100 Annotation

Gene ID	Annotation
MD12G1083100	eukaryotic translation initiation factor 3E

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0821	translation initiation factor 3 subunit E tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] tRNA (guanine-N7-)-methyltransferase activity hydrogen-translocating pyrophosphatase activity organic anion transmembrane transporter activity inorganic diphosphatase activity inorganic phosphate transmembrane transporter activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1083100	mRNA	Chr12	10083080	10086897	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G57290.1	1	ATEIF3E-1;ATINT6;EIF3E;INT6;INT-6;TIF3E1\|eukaryotic translation initiation factor 3E
Prunus persica	Prupe.7G052700.2.p	1	eukaryotic translation initiation factor 3E
Prunus persica	Prupe.7G052700.1.p	1	eukaryotic translation initiation factor 3E
Pyrus communis	PCP018604.1	1	-
Rosa multiflora	Rmu_sc0002252.1_g000014.1	1	-
Rubus occidentalis	Ro06_G23395	1	-
Fragaria vesca	mrna21966.1	1	eukaryotic translation initiation factor 3E
Vitis vinifera	GSVIVT01005045001	1	eukaryotic translation initiation factor 3E
Populus trichocarpa	Potri.006G047600.1	1	eukaryotic translation initiation factor 3E
Nicotiana benthamiana	Niben101Scf01578g03010.1	1	Eukaryotic translation initiation factor 3 subunit E
Oryza sativa	LOC_Os07g32040.1	1	"eukaryotic translation initiation factor 3 subunit E, putative"
Oryza sativa	LOC_Os07g12110.1	1	"eukaryotic translation initiation factor 3 subunit E, putative, expressed"
Zea mays	GRMZM2G151549_P01	1	Eukaryotic translation initiation factor 3 subunit E
Zea mays	GRMZM2G038313_P01	0.794	Eukaryotic translation initiation factor 3 subunit E

Gene Ontology

GO term	Description	Category
GO:0005852	eukaryotic translation initiation factor 3 complex	cellular component
GO:0005515	protein binding	molecular_function
GO:0003743	translation initiation factor activity	molecular_function

KEGG

KO	Description	Enzyme
K03250	translation initiation factor 3 subunit E	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09440.6	eIF3_N	5	137	1.40E-50

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	25.8055
SRR5252888	dormant buds	no	dormant buds(0 month)	17.129
SRR5252889	dormant buds	no	dormant buds(0 month)	14.8059
SRR5252886	dormant buds	no	dormant buds(1 months)	21.9821
SRR5252887	dormant buds	no	dormant buds(1 months)	19.627
SRR5252884	dormant buds	no	dormant buds(2 months)	20.3596
SRR5252882	dormant buds	no	dormant buds(3 months)	21.5593
SRR5252883	dormant buds	no	dormant buds(3 months)	19.5081
SRR5252880	dormant buds	no	dormant buds(4 months)	24.7391
SRR5252881	dormant buds	no	dormant buds(4 months)	27.8802
SRR5252878	bud break	no	bud break	20.298
SRR5252879	bud break	no	bud break	38.8922
SRR3744766	flower	no	mature	11.7657
SRR3744767	flower	no	mature	11.9867
SRR3744768	flower	no	mature	12.6895
SRR6308190	stigmas	no	open flowers	8.61997
SRR6308181	styles	no	open flowers	11.9053
SRR6308188	filaments	no	open flowers	30.4611
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	20.4603
SRR6308192	pollen	no	open flowers	41.8159
SRR6308191	petals	no	open flowers	22.7075
SRR6308194	sepals	no	open flowers	17.4755
SRR6308193	receptacles	no	open flowers	24.1968
SRR6308189	ovaries	no	open flowers	16.5731
SRR3384922	fruit	no	1 week after full bloom	21.4276
SRR3384921	fruit	no	2 week after full bloom	19.4888
SRR3384920	fruit	no	3 week after full bloom	12.1181
SRR3384919	fruit	no	4 week after full bloom	14.2877
SRR3384923	fruit	no	5 week after full bloom	10.6467
SRR3384918	fruit	no	6 week after full bloom	8.90966
SRR3384917	fruit	no	8 week after full bloom	10.2308
SRR3384916	fruit	no	10 week after full bloom	10.0263
SRR3384915	fruit	no	12 week after full bloom	10.5755
SRR3384914	fruit	no	14 week after full bloom	10.9257
SRR3384913	fruit	no	16 week after full bloom	11.5029
SRR3384912	fruit	no	18 week after full bloom	12.3723
SRR3384911	fruit	no	19 week after full bloom	10.9209
SRR3384910	fruit	no	20 week after full bloom	12.4745
SRR768128	whole fruit	no	25 days post anthesis	15.3671
SRR768129	whole fruit	no	35 days post anthesis	15.1114
SRR768130	whole fruit	no	60 days post anthesis	11.0412
SRR768131	whole fruit	no	87 days post anthesis	14.915
SRR7343308	immature fruit flesh	no	immature	19.9549
SRR7343309	immature fruit flesh	no	immature	31.6967
SRR6320494	ripe fruit flesh	no	mature	14.089
SRR5405143	ripe fruit peel	no	mature	13.9111
SRR6320572	ripe fruit peel	no	mature	12.241
SRR7403504	fruit	uninfected	mature	11.5329
SRR7403506	fruit	uninfected	mature	10.461
SRR7403507	fruit	uninfected	mature	11.9561
SRR7403500	fruit	infected with penicillium expansum	mature	16.8504
SRR7403501	fruit	infected with penicillium expansum	mature	16.9546
SRR7403508	fruit	infected with penicillium expansum	mature	17.7532
SRR7403502	fruit	infected with penicillium expansum	mature	21.7501
SRR7403503	fruit	infected with penicillium expansum	mature	18.5737
SRR7403505	fruit	infected with penicillium expansum	mature	21.4126
SRR1613973	Central seeds	no	20DAPF	55.7322
SRR1613974	Central seeds	no	20DAPF	55.0341
SRR1613975	Central seeds	no	20DAPF	51.8599
SRR1613976	Lateral seeds	no	20DAPF	47.2457
SRR1613977	Lateral seeds	no	20DAPF	48.0331
SRR1613978	Lateral seeds	no	20DAPF	49.9568
SRR3744786	stem	no	mature	13.2052
SRR3744787	stem	no	mature	11.5704
SRR3744772	stem	no	mature	11.9222
SRX765691	seedling shoot apex	no	4-6 week old seedling	29.1255
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	25.4313
SRR1089478	leaf	Virus-free	plantlets	15.8273
SRR1089477	leaf	ASGV-infected	plantlets	15.1307
SRR767660	leaf	uninfected	fully developed	11.7173
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.83422
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.2117
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.84813
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.08599
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.7796
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.41015
SRR6308182	young leaf	no	immature leaves	44.8743
SRR3744769	leaf	no	mature	9.18982
SRR3744770	leaf	no	mature	9.3763
SRR3744771	leaf	no	mature	8.324
SRR5405145	leaf	no	mature	8.67571
SRR6320561	leaf	no	mature	15.3739