| Gene ID | Annotation |
|---|---|
| MD12G1086800 | isopentenyl diphosphate isomerase 1 |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0123 | CYP74A1 isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] hydroperoxide dehydratase [EC:4.2.1.92] dodecenoyl-CoA delta-isomerase activity allene oxide synthase activity isopentenyl-diphosphate delta-isomerase activity carnitine racemase activity 3-deoxy-7-phosphoheptulonate synthase activity |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD12G1086800 | mRNA | Chr12 | 10648966 | 10651756 | + |
| CDS: |
| MD12G1086800 |
| Protein: |
| MD12G1086800 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G16440.1 | 1 | IPP1|isopentenyl diphosphate isomerase 1 |
| Prunus persica | Prupe.6G361700.3.p | 1 | isopentenyl diphosphate isomerase 1 |
| Prunus persica | Prupe.6G361700.1.p | 1 | isopentenyl diphosphate isomerase 1 |
| Pyrus communis | PCP001367.1 | 1 | - |
| Rosa multiflora | Rmu_ssc0000391.1_g000034.1 | 1 | - |
| Rubus occidentalis | Ro06_G09227 | 1 | - |
| Fragaria vesca | mrna16810.1 | 1 | isopentenyl diphosphate isomerase 1 |
| Vitis vinifera | GSVIVT01019089001 | 1 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 |
| Solanum lycopersicum | Solyc05g055760.2.1 | 1 | isopentenyl diphosphate isomerase 1 |
| Populus trichocarpa | Potri.019G053700.1 | 1 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 |
| Nicotiana benthamiana | Niben101Scf05848g05012.1 | 1 | Isopentenyl-diphosphate Delta-isomerase II |
| Oryza sativa | LOC_Os07g36190.1 | 1 | "hydrolase, NUDIX family, domain containing protein, expressed" |
| Oryza sativa | LOC_Os05g34180.1 | 1 | "hydrolase, NUDIX family, domain containing protein, expressed" |
| Zea mays | GRMZM2G145029_P01 | 1 | - |
| Zea mays | GRMZM2G133082_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008299 | isoprenoid biosynthetic process | biological_process |
| GO:0004452 | isopentenyl-diphosphate delta-isomerase activity | molecular_function |
| KO | Description | Enzyme |
|---|---|---|
| K01823 | isopentenyl-diphosphate Delta-isomerase | EC:5.3.3.2 |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00293.24 | NUDIX | 107 | 256 | 7.90E-28 |
 |