Gene detail

Detail information of MD12G1104000 Annotation

Gene ID	Annotation
MD12G1104000	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0991	serine/arginine repetitive matrix protein 1 arginine and glutamate-rich protein 1 beta-arabinofuranosyltransferase [EC:2.4.2.-] histone methyltransferase activity (H3-K4 specific) DNA binding histone H3 nucleotidyltransferase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1104000	mRNA	Chr12	16383704	16391498	+

Sequences

CDS:

MD12G1104000

ACCTATTCACTGAACTTATTTACGGATCCCACCATTACCCACCCTTCCTATCATGCGACTGCTGTCTATCTGATTCTCTCCCCTCTCTCTCTCCTCTCTCCCCTCGCTGACAGTCGAGTCAGTTCACCCTCCCGATAACGGCGATATCGTGGCCCTCTCCGCCTCCCTCCTATCAAATCTCCATTCGAATTTGGAGAAACAGTAAGTGAAAGTCCTTCATAAACTCTAATTTATATCCATCCGATCTTAATCTCTCACATTTCTTAGCCATCTCAGAGTTGCAGTTCGAACCGATTTCACTTGCATGGCCGTCATCTGATATATCCGATTTTGGGGACGATTTGTGGGACTGAACCGGCATGAAGCGGGAATTGGCTTGTGTTTTGAAGGGTCAGACTCGGCTCGCTGATTCAGTGGCTGGGACTCAGGACGAGTCCCAGACGAGTCCGTTTGTTGTATATGAGAGACTTAATCGTAAGAGGTTTAAGGGTGCGGTTGTGAATGGTGTGATTGTCTATACCCGAGAGAGAAGGGCTCGGATCAAGGGCGGTAATGGGGTTTCGGAGGGGGCGGAGATAAATGGGCGGAATGGCTCGGAAAAGCCGAGAATTGAGGAAACCCCATCTCATCAATTAGTTGAATGTTTAGTTAAAGATGAGTCAAATTGCAATTTGGAGATACCCAGTTGTAGACATGAGGGTGGCAGTGAGCGGTCAGGGTCTTCGTGTGAGGAGCACGATATGGAAGCAGACTTAGTTGAAATTGTAGTTAAAGATGAGCCCAATTATCATGAGGGGGAAACAGATATGAAAGGCGGGGCATTGAGGCGGTTTACTCGATCAGCATTGAGACCCAAGTTTGAGCCTACTGTGGAAAATGCATCAGGGTCTGTGCCTGTTGAAGTGATTTCAAATATAGAGGGGGAAGATACAGTTGGAGTCAGCATGCTGACATCGCCACTGAAGAATAAGCTAGAATTGAAAATGTCAAAGAAGATTGTGGTGGACAGGAAACCTACAACAGTCAAAGAGCTCTTTGACACTGGCTTGGTTGATGGGGTGCAAGTGATTTACATGGGCAGCAAGAAGGCATTCGGTCTGCGGGGCACAATAAGGGATGGTGGAATTTTGTGTTCATGCATACTGTGCAACGGCGGCAGAGTTATTCCACCGTCCCAATTTGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTATATTTGTTTTGAGAATGGAAAGAGTCTGCTTGATCTCTTGAAGTCGTGCAGAAATGCTTCTTTGCATACATTGGAAACAACAATTCAGAAGTTCATCAGTTCTTCACCCATGGAGAAGTATTTTACTTGTAAAAAGTGTAGTGTGTCTTTTCCTCCATACTGTGCTCTGGGTGATGGATCTCTTTGCTATTCTTGCATGGAGCCGAAGCAGCCTGAGTGCAGCCTAACTCATGAGAGAGGCAATAGTCTCAGTTCTTTGATACCTGTTTCAATCTCAAAGTCCTCCAAGAGTGCAATCTCAAAGTCCCGGAAAAGTGCAATCTCAAAGTCCCTGAAAAGTACAATCTCAAAGTCCTTGAAAAGTGCAATCTCAAAACCCTTGAGAAGTGCAATCTCAACTCCCCAGAAAAATGCAGTGTCAAAATCCCCCAAGAGTGCTCCACTCTATTTGTCACTGAAAAAGAAGACCCAGTTGAATACAAGAAAGTCATCAACGCCAGTTTTGATCTCAGATCCGTCAAAAAGTTCTTCTCCAGAGAGTTCAGATTATAAGAGTGGATGGAAGATAACACCAAAGTTGATCTTCAAAATCAATTCTGATCTCAAGGCCCCCCAGTACTTCTTCAGTGTATTTTTCTTCGCAGAAGAAAAGTCAGTGGAGGATTACAACAAAGTAGATCAGCGGCTGCATAAGTTGGTTTTCGAGGAAGGTGGATTGCCTGACGGAACAGAAGTAGCATATTATGCACGCGGACAGAAATTGCTAGTTGGTTACAAGAAAGGATTTGGAATATTTTGTTGTTGCTGCAACAGTGAGGTCAGCCCGTCACAGTTTGAGGCCCATGCAGGTTGGGCCACACGCAGGAAACCCTATGCATACATTTACACATCTAACGGAGTGTCTCTCCACGAGTTGGCTATATCTTTGTCAAGAGGTCGGAAATATGCAGCCAAGGATAATGATGACTTGTGCATCATTTGTGCCGATGGTGGGAATCTTGTGCTTTGTGATGGATGCCCTAGGGCCTTCCACAGAGACTGTGCTTCTCTACCAAGTGTTCCTCGTGGTGACTGGTACTGTAAGTTTTGTCAAAATATGTTTCAAAGAGAAAAGTTTGTGGAACATAATGAAAATGCTGTTGCTGCTGGAAGGATTGATGGAATTGATCCTATAGAACAGATAACCCAAAGATGCATTCGTATTGTCAAAGACATAGAAGCTGAACTAACTGGATGCGTTTTATGTAGAGGTTATGATTTTAGCAAATCAGGATTTGGTCCACGAACTATTATACTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAATTTAAAGGAATTGCCAAAAGGGAAGTGGTTTTGTTGCGCAGACTGCAGTAGAATTCATTCTATTTTGCAAAGGTTGCTGACTAGAGGAGCTGAGAAGCTTCCTGACTCTCATTTGGATGTTATAAAGAAGAAGATGGAGGCAAATGGTTTGGAGACTGTCAGTGGGTTTGATGTGAGATGGAGACTTATTAGTGGCAAAATTGCTTCTCAGGAATGTCGTTTTTTACTTTCAAAGGCTGTTGCTATCTTCCACGATTGCTTTGATCCTATAGTTGATGCAGAATCTGGGCGAGACCTTATTCCCGCCATGGTTTATGGAAGGAATGTTAGGAGCCAAGAATTTGGGAATATGTACTGTGCAATACTGATGGTCAACTCAACTGTGGTATCAGCTGGAATTATACGTGTTTTTGGTCATGAAGTTGCTGAACTTCCTTTGGTCGCCACTAGTAATGGTAACCATGGCAAGGGCTACTTCCAACTATTGTTCTCCTGCATTGAAAAGCTGCTAGCTTTCTTGAATGTGAAAAGTATTGTGCTGCCGGCTGCGGAAGAAGCAGAATCCATATGGACCGATAAATTTGGTTTTACAAAAATGAAGCCGGAGCAGCTCACCACCTACCGAAGAACCTGCTACCAAATGGTGACATTCAAAGGAACGTCAATGCTACATAAAAGGGTTCCCGAGTGCCGGGTTGTAAGCACATGAGGGAAGGGGAGAGCGAAGGGAGATTTTTCAATTTTTGTTTTCTGATCTTTTATTAGCAAGCTTTTTGTTTCCAGTTCATGTTTGTAAAATTTTATGAATTGGAATTGTCAAGCCTCTGCTGTTCATATCAACATTTTTTGGTTATTGAACATCACCTTAATAGCTAGATTTCTATAATACACATTCTGCATGCGTTTGGTAA

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	PHD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G36720.1	1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Pyrus communis	PCP000681.1	1	-
Pyrus x bretschneideri	Pbr032562.2	1	-
Fragaria vesca	mrna00092.1	1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Vitis vinifera	GSVIVT01033711001	1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Solanum lycopersicum	Solyc10g083800.1.1	1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Populus trichocarpa	Potri.006G120200.1	1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Nicotiana benthamiana	Niben101Scf02502g10022.1	1	RING/FYVE/PHD zinc finger superfamily protein LENGTH=1193
Zea mays	GRMZM2G134214_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.25	PHD	612	653	2.20E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	11.4859
SRR5252888	dormant buds	no	dormant buds(0 month)	20.4109
SRR5252889	dormant buds	no	dormant buds(0 month)	21.6354
SRR5252886	dormant buds	no	dormant buds(1 months)	20.2616
SRR5252887	dormant buds	no	dormant buds(1 months)	18.4013
SRR5252884	dormant buds	no	dormant buds(2 months)	26.3754
SRR5252882	dormant buds	no	dormant buds(3 months)	25.8685
SRR5252883	dormant buds	no	dormant buds(3 months)	21.1809
SRR5252880	dormant buds	no	dormant buds(4 months)	28.1507
SRR5252881	dormant buds	no	dormant buds(4 months)	26.632
SRR5252878	bud break	no	bud break	20.0001
SRR5252879	bud break	no	bud break	17.3718
SRR3744766	flower	no	mature	14.4967
SRR3744767	flower	no	mature	15.7504
SRR3744768	flower	no	mature	15.8511
SRR6308190	stigmas	no	open flowers	11.4086
SRR6308181	styles	no	open flowers	11.5781
SRR6308188	filaments	no	open flowers	10.5843
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	9.07225
SRR6308192	pollen	no	open flowers	19.5019
SRR6308191	petals	no	open flowers	8.93466
SRR6308194	sepals	no	open flowers	12.338
SRR6308193	receptacles	no	open flowers	10.8752
SRR6308189	ovaries	no	open flowers	10.1188
SRR3384922	fruit	no	1 week after full bloom	5.54069
SRR3384921	fruit	no	2 week after full bloom	6.78724
SRR3384920	fruit	no	3 week after full bloom	7.93216
SRR3384919	fruit	no	4 week after full bloom	7.00691
SRR3384923	fruit	no	5 week after full bloom	6.22437
SRR3384918	fruit	no	6 week after full bloom	7.86421
SRR3384917	fruit	no	8 week after full bloom	7.51812
SRR3384916	fruit	no	10 week after full bloom	8.90959
SRR3384915	fruit	no	12 week after full bloom	8.79657
SRR3384914	fruit	no	14 week after full bloom	8.98886
SRR3384913	fruit	no	16 week after full bloom	7.65093
SRR3384912	fruit	no	18 week after full bloom	8.92444
SRR3384911	fruit	no	19 week after full bloom	6.47425
SRR3384910	fruit	no	20 week after full bloom	6.49307
SRR768128	whole fruit	no	25 days post anthesis	13.3157
SRR768129	whole fruit	no	35 days post anthesis	5.16627
SRR768130	whole fruit	no	60 days post anthesis	6.6356
SRR768131	whole fruit	no	87 days post anthesis	9.03616
SRR7343308	immature fruit flesh	no	immature	13.0538
SRR7343309	immature fruit flesh	no	immature	11.1383
SRR6320494	ripe fruit flesh	no	mature	21.5002
SRR5405143	ripe fruit peel	no	mature	19.4666
SRR6320572	ripe fruit peel	no	mature	11.1973
SRR7403504	fruit	uninfected	mature	14.4582
SRR7403506	fruit	uninfected	mature	13.7859
SRR7403507	fruit	uninfected	mature	13.4892
SRR7403500	fruit	infected with penicillium expansum	mature	2.45842
SRR7403501	fruit	infected with penicillium expansum	mature	2.82131
SRR7403508	fruit	infected with penicillium expansum	mature	1.82346
SRR7403502	fruit	infected with penicillium expansum	mature	3.44317
SRR7403503	fruit	infected with penicillium expansum	mature	3.14927
SRR7403505	fruit	infected with penicillium expansum	mature	2.88525
SRR1613973	Central seeds	no	20DAPF	8.59616
SRR1613974	Central seeds	no	20DAPF	9.49241
SRR1613975	Central seeds	no	20DAPF	8.547
SRR1613976	Lateral seeds	no	20DAPF	8.22606
SRR1613977	Lateral seeds	no	20DAPF	7.47987
SRR1613978	Lateral seeds	no	20DAPF	8.37243
SRR3744786	stem	no	mature	18.0637
SRR3744787	stem	no	mature	17.5316
SRR3744772	stem	no	mature	19.8162
SRX765691	seedling shoot apex	no	4-6 week old seedling	16.4073
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.6478
SRR1089478	leaf	Virus-free	plantlets	7.87875
SRR1089477	leaf	ASGV-infected	plantlets	8.19414
SRR767660	leaf	uninfected	fully developed	3.35057
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.13375
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.68343
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.15398
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	14.0389
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.27379
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.93776
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.47394
SRR6308182	young leaf	no	immature leaves	12.3318
SRR3744769	leaf	no	mature	20.1334
SRR3744770	leaf	no	mature	19.4301
SRR3744771	leaf	no	mature	21.7384
SRR5405145	leaf	no	mature	14.6165
SRR6320561	leaf	no	mature	12.5606