Gene detail

Detail information of MD12G1106600 Annotation

Gene ID	Annotation
MD12G1106600	RAB GTPase homolog C2A

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1106600	mRNA	Chr12	16891458	16893496	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G03530.1	1	ATRAB;ATRAB ALPHA;ATRAB18B;ATRABC2A;RABC2A\|ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A;RAB GTPase homolog C2A
Vitis vinifera	GSVIVT01033681001	1	RAB GTPase homolog C2A
Solanum lycopersicum	Solyc09g008460.2.1	1	RAB GTPase homolog C2A
Solanum lycopersicum	Solyc11g008020.1.1	1	RAB GTPase homolog C2A
Populus trichocarpa	Potri.006G121400.1	1	RAB GTPase homolog C2A
Nicotiana benthamiana	Niben101Scf11823g00020.1	1	Ras-related protein Rab-26
Nicotiana benthamiana	Niben101Scf00457g05011.1	0.859	Ras-related protein Rab-26
Oryza sativa	LOC_Os10g31830.1	1	"ras-related protein, putative, expressed"
Oryza sativa	LOC_Os03g05280.1	1	"ras-related protein, putative, expressed"
Zea mays	GRMZM2G075051_P01	1	Ras-related protein Rab-18;
Zea mays	GRMZM5G809265_P01	1	Ras-related protein Rab-18

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0016020	membrane	cellular component
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0006913	nucleocytoplasmic transport	biological_process
GO:0006184	obsolete GTP catabolic process	biological_process
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K07910	Ras-related protein Rab-18	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.18	Ras	16	177	9.80E-55

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.27147
SRR5252888	dormant buds	no	dormant buds(0 month)	3.3616
SRR5252889	dormant buds	no	dormant buds(0 month)	2.41072
SRR5252886	dormant buds	no	dormant buds(1 months)	4.47359
SRR5252887	dormant buds	no	dormant buds(1 months)	3.24174
SRR5252884	dormant buds	no	dormant buds(2 months)	3.2788
SRR5252882	dormant buds	no	dormant buds(3 months)	4.32692
SRR5252883	dormant buds	no	dormant buds(3 months)	1.69737
SRR5252880	dormant buds	no	dormant buds(4 months)	4.49103
SRR5252881	dormant buds	no	dormant buds(4 months)	3.73864
SRR5252878	bud break	no	bud break	7.39799
SRR5252879	bud break	no	bud break	6.39115
SRR3744766	flower	no	mature	0.69585
SRR3744767	flower	no	mature	0.771053
SRR3744768	flower	no	mature	1.33198
SRR6308190	stigmas	no	open flowers	0.680585
SRR6308181	styles	no	open flowers	2.45429
SRR6308188	filaments	no	open flowers	1.40816
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.362182
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.900813
SRR6308194	sepals	no	open flowers	0.72767
SRR6308193	receptacles	no	open flowers	1.27651
SRR6308189	ovaries	no	open flowers	2.07348
SRR3384922	fruit	no	1 week after full bloom	2.75485
SRR3384921	fruit	no	2 week after full bloom	1.84179
SRR3384920	fruit	no	3 week after full bloom	2.00786
SRR3384919	fruit	no	4 week after full bloom	4.28068
SRR3384923	fruit	no	5 week after full bloom	2.30684
SRR3384918	fruit	no	6 week after full bloom	2.11481
SRR3384917	fruit	no	8 week after full bloom	1.9628
SRR3384916	fruit	no	10 week after full bloom	1.34575
SRR3384915	fruit	no	12 week after full bloom	1.17326
SRR3384914	fruit	no	14 week after full bloom	0.40639
SRR3384913	fruit	no	16 week after full bloom	0.574391
SRR3384912	fruit	no	18 week after full bloom	0.449197
SRR3384911	fruit	no	19 week after full bloom	0.516999
SRR3384910	fruit	no	20 week after full bloom	0.472262
SRR768128	whole fruit	no	25 days post anthesis	2.52968
SRR768129	whole fruit	no	35 days post anthesis	4.70116
SRR768130	whole fruit	no	60 days post anthesis	1.79135
SRR768131	whole fruit	no	87 days post anthesis	1.4832
SRR7343308	immature fruit flesh	no	immature	3.35379
SRR7343309	immature fruit flesh	no	immature	4.78411
SRR6320494	ripe fruit flesh	no	mature	0.911397
SRR5405143	ripe fruit peel	no	mature	0.536603
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.76352
SRR7403506	fruit	uninfected	mature	0.474439
SRR7403507	fruit	uninfected	mature	0.844975
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0963915
SRR1613973	Central seeds	no	20DAPF	10.3323
SRR1613974	Central seeds	no	20DAPF	12.4596
SRR1613975	Central seeds	no	20DAPF	9.95185
SRR1613976	Lateral seeds	no	20DAPF	9.18023
SRR1613977	Lateral seeds	no	20DAPF	10.1589
SRR1613978	Lateral seeds	no	20DAPF	9.96954
SRR3744786	stem	no	mature	0.48991
SRR3744787	stem	no	mature	0.634222
SRR3744772	stem	no	mature	0.595334
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.16467
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.4299
SRR1089478	leaf	Virus-free	plantlets	1.08586
SRR1089477	leaf	ASGV-infected	plantlets	0.962618
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.452683
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.200544
SRR6308182	young leaf	no	immature leaves	3.41
SRR3744769	leaf	no	mature	0.19219
SRR3744770	leaf	no	mature	0.28443
SRR3744771	leaf	no	mature	0.0801645
SRR5405145	leaf	no	mature	0.553659
SRR6320561	leaf	no	mature	1.62082