Gene detail

Detail information of MD12G1111500 Annotation

Gene ID	Annotation
MD12G1111500	Duplicated homeodomain-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1111500	mRNA	Chr12	17679599	17684314	+

Sequences

CDS:

MD12G1111500

ATGGGGCCCATTGATTCCAATGAAGCAAAGGTTGAGTCACAGCCGAAAACAGCCACTCCAGTGCAGTCTCCTTCGGGAGAAGCTACTAATTGTGTAACATCTGCTGCACCTTTAGAGGAAACAACTTCGAGGAAGAAGCCGCGCCTTGGATGGGGCGAGGGTTTGGCAAAGTATGAGAAAAAGAAAGTCGACGTCCCTGATGGTAGCATGAACAAAGATGCGGCTGTCTGTTCTGTTGGTAACACTGAACCAGCCCATTCTCTGAGTTCAAGCTTGCCTGATAAAAGCCCCCGAGTCACAGTTTTCTCAGATTGTGCATCTCCTGCAACTCCATCCTCTGTTGCTTGCAGTTCTTCTCCAGGTGTGGAGGAGAAATCATTTTGCAAGGCAGTTAATGTTGAGAACGATACTAGAAACTTTTGTGGTTCCCCAGGTCCTATGTCTCAGATTCATCACGAGGGATTCTCATTCCAATTGGAAAAGTTGGATGGTAATTCTTTAGTTAACATGGACTCATCAATACTTGAATTGCTTCAGTCTGATGATCCAAGTTCAGTGGATTCCAGTATCCCGAGGCCGACTGCATTGAACAAGTTGCTTATATGGAAAGGTGAAATTTCAAAGGTATTGGAGGTAACTGAGTCAGAAATTGATTCACTCGAAAACGAACTTAAGGCACTGAAATCTGATTCTGGGGGCAGCTGTCCCCATCCAGCAACTTCTAGTTCTTTGCCTGTGGAGGAGAAGGATAAATCTTGCAAAGAACAGGTCACAAATTTGATCACTTGGCCTTCTCCATTGCAAATTCATTCTTCTGGGGACACTAATGTGCAGAAGATGTGTGTTGATAATGGTGACCAGGTAGAATTTTGTGGTATTGTTAAGGATGAGGATATTGATAGTCCTGGAACAGCGACATCGAAATTTGTTGAATCATTACCTTTGGTTTCATCTGATATGACGAATAAAACTGGTGGTTCTGAGGATCGGGATCCAATCCAAACAACCAAAGGAGAAGAAACGTGCTTAGTGCCCAGCAGATATGCAGAAAAGACTGACCCATCTACTTGTGGTAATAGTAGCATGCTTTTGGATAGTGAGGTAGTTGCACCGGACTCTGGTGTAGTAGTAGATAAGTTATGCGATTCTATATTTTCTGCCAATAAAATATTTGCAAGTAGAGCATCTGACATATTTAGTAAGCTGTTATCAAAAGAGCATATTTCTGGAGTTAGTGTTTCCTCATCCTGGAAGAATGATTCATTGATCAAAGAGAAGTTTGCCAAGAGGAAGCGACATTTAAGGTTTATGGAGAGAGTTATAACCTTAAAATTTAAAGCCTTTCAACACTTGTGGAAGGAAGACATGAGTGTGCTTTCCATGCGAAAATATCGTTCAAAATCTCACAAAAAATTTGAGTTAAGCTTGCGAGCAACTAATAATGGACATCAGAAGCATCGCTCTTCAATTCGATCGCGATTTTCTACACCTGGAAGTCTGAGCCTGGTCCCTACTACAGAGATTATTAATTTCACTAACAAGTTGCTGTCAGATTCCCAAGTCAAGCCGTACAGGAACTCGTTGAAGATGCCAGCCTTAATCTTGGACAAGGAGGAGAAGTTGGCGACAAGATTTGTTTCTAGTAATGGTTTAGTTGAAGATCCCTGTGCTGTTGAGAAGGAAAGGGCTTTGATGAACCCATGGACGCCAGAAGAGAAAGAACTTTTCATCCAAAAGCTAACCACCTACGGGAAGGATTTCAGAAAAATTTCTTCCTTTCTTGATCACAAGACGACTGCTGACTGTGTGGAGTTTTACTACAAACACCACAAGTCTGATTGCTTTGTGAAAACAAAGAAGAAGCCTGATATGGCTAAGCAAGGAAAGTCTTCGGCTAATACCTACTTAATTTCAGATGGGAAAAAATGGAATCGTGAGATGGATGCTGCTTCCCTTGATATTTTGGGTGCTGCTTCAGCAATCGCAGCTCATGCTGATGGTGGTACAAGAAATCGACAAACGTATTCGAGGAGGTTAATTTTGGGAGCGTACAGGAATACTAATACGTCTCGTAGTGAGGATACCACTGTTGAAAGGTCTTGCAGTCTTGATACTATTGGCAACGAAAGAGAAACAGCTGCTGCTGATGTTTTAGCAGGTATATGTGGCTCAATGTCATCTGAGGCGGTGAGTTCTTGCATCACTAGTTCCATTGATCCTGGTGAGTCTTATCTGGAATGGAAGTGCCAGAAAGGGGATTCGGTAGTAAGGCAACCTTTGACACCTGATGTTATGCAGAATGTGGATGATGAGACTTGCTCAGATGAAAGTTGTGGAGAAATGGATCCTTCTGACTGGACAGACGAGGAGAAGTCTAGATTTATTCAGGCAGTGTCATCCTATGGAAAGGATTTTGCTATGATCTCGCGATGCATTAGATCGAGGTCTCAGCATCAATGCAAGGTTTTCTTTAGCAAGGCTCGGAAGTGCCTTGGGCTTGATTTTGTACATCCTGGGCCCGGAAATGGAACATCTGTTGGTGATGATGCTAATGGAGGTGGGAGTGACACTGAAGATGCCTGTGTTCTGGAAACTGGTTCAGGTATTTCCAGTGACAAGTCAGGATGTAACATGAACGAGGATGTGCCGCCGTCTGTCACAAACATGAATGCTGATGAAGCTGATCCTGCGGAGACCATGAAATTGCAAACAAGCCCACCCAGACCGGAGGAAAACAATGTGATGGGAGAAGTAGATCATGGAGATGGTAAGCCTCTCAAATCTCTGGCTTCTGATGCATTCCAGACGGTGGATAAGCCTAAGCTAGTTTTTGATGGCGACACTGATATCATGGATTTCGATGCTATGGGAGGTAATGCAACTGAAAACAAAATTTTGGTTGCAGAATCACGACCTGTTGGTGAGGGAATCAACTCTGACCCACCTAATCCTGAATGTATGGTTGGGGAAAAATTGGTCGGTCAAATTTCTTCTGATCGATTTGGAAAGAAACTGGAGGGGAGCGATGAAAGAAGCAATAGAGATCCAAGTGGATGCTGCTTACCAGCCTCAGCACACAATTCATGTGGCAATACTTCTGATGTGGCTGCTGATGGTTCTTGTTCAGGTCCTGGCCTTAACCCTGAGTGCCCATGTCAAGTTTCTGTAGAGCTGAATTCTGTGCAAAACCCTTCTGTCATCTCGTTGACACATGAGAATGCTCCTGCTACTGCAGTTTCTGTGCCACAAGATTCTGCTGTCATTGAATGCGAGAAATCCCTTAGCCAAGATAGGTTGTCATCAACCCTGGATCTGCGGGAGGGATCTGTTGGTAGAGATGAGAGTCGCAAGCACTTGTCAGGTCTTCTGGGACATGCAAACGTCGAACCTTTGCAAGTTCTCAGAGGCTATCCATTGCAAATGGTACCCAAGAAAGAGACGAATGGGGATGTAAGTTGTGGTAAATTTATCTGA

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
K04650	nuclear receptor co-repressor 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.27	Myb_DNA-binding	566	609	8.30E-08
PF00249.27	Myb_DNA-binding	785	825	1.00E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.190631
SRR5252888	dormant buds	no	dormant buds(0 month)	0.543175
SRR5252889	dormant buds	no	dormant buds(0 month)	0.393274
SRR5252886	dormant buds	no	dormant buds(1 months)	0.459997
SRR5252887	dormant buds	no	dormant buds(1 months)	0.427776
SRR5252884	dormant buds	no	dormant buds(2 months)	0.48797
SRR5252882	dormant buds	no	dormant buds(3 months)	0.831992
SRR5252883	dormant buds	no	dormant buds(3 months)	0.479963
SRR5252880	dormant buds	no	dormant buds(4 months)	0.732648
SRR5252881	dormant buds	no	dormant buds(4 months)	0.460818
SRR5252878	bud break	no	bud break	0.68109
SRR5252879	bud break	no	bud break	0.377627
SRR3744766	flower	no	mature	0.617375
SRR3744767	flower	no	mature	0.591951
SRR3744768	flower	no	mature	0.406074
SRR6308190	stigmas	no	open flowers	0.117747
SRR6308181	styles	no	open flowers	0.0338107
SRR6308188	filaments	no	open flowers	0.30379
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.261886
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.303517
SRR6308194	sepals	no	open flowers	0.37813
SRR6308193	receptacles	no	open flowers	0.0335119
SRR6308189	ovaries	no	open flowers	0.0817557
SRR3384922	fruit	no	1 week after full bloom	0.0229061
SRR3384921	fruit	no	2 week after full bloom	0
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0.0507961
SRR3384911	fruit	no	19 week after full bloom	0.0243597
SRR3384910	fruit	no	20 week after full bloom	0.0762919
SRR768128	whole fruit	no	25 days post anthesis	0.110553
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0.101772
SRR768131	whole fruit	no	87 days post anthesis	0.229814
SRR7343308	immature fruit flesh	no	immature	0.135195
SRR7343309	immature fruit flesh	no	immature	0.134814
SRR6320494	ripe fruit flesh	no	mature	0.130113
SRR5405143	ripe fruit peel	no	mature	0.376087
SRR6320572	ripe fruit peel	no	mature	0.11362
SRR7403504	fruit	uninfected	mature	0.114669
SRR7403506	fruit	uninfected	mature	0.161507
SRR7403507	fruit	uninfected	mature	0.127842
SRR7403500	fruit	infected with penicillium expansum	mature	0.197578
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.246594
SRR7403502	fruit	infected with penicillium expansum	mature	0.217889
SRR7403503	fruit	infected with penicillium expansum	mature	0.334627
SRR7403505	fruit	infected with penicillium expansum	mature	0.300789
SRR1613973	Central seeds	no	20DAPF	0.0205936
SRR1613974	Central seeds	no	20DAPF	0.0377288
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0303073
SRR1613977	Lateral seeds	no	20DAPF	0.0156301
SRR1613978	Lateral seeds	no	20DAPF	0.0119642
SRR3744786	stem	no	mature	0.572641
SRR3744787	stem	no	mature	0.617639
SRR3744772	stem	no	mature	0.544167
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.403457
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.369987
SRR1089478	leaf	Virus-free	plantlets	0.0442173
SRR1089477	leaf	ASGV-infected	plantlets	0.137195
SRR767660	leaf	uninfected	fully developed	0.134637
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.140774
SRR3744769	leaf	no	mature	0.725049
SRR3744770	leaf	no	mature	0.81568
SRR3744771	leaf	no	mature	0.845902
SRR5405145	leaf	no	mature	0.235567
SRR6320561	leaf	no	mature	0.174443