Gene detail

Detail information of MD12G1128600 Annotation

Gene ID	Annotation
MD12G1128600	pseudo-response regulator 7

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1128600	mRNA	Chr12	20363002	20368375	+

Sequences

CDS:

MD12G1128600

CTCTCCTCTTTCTTCTCTTTCCCTGACGAAAGGTTCGGCGATTATCTCTGTCCCTCTCTCTCTCATCTGTAGCTGTTGACACAGTTTATGTTTCTTGTTCCGGTCAAGGTTGTCGGAAACACAAAGTTATCTGAAAGTATCCGAACCAAGACATTTTTGAAGATCCAAACTAAGATTTTCAGGATTATTCTCTGACTGAAATTTGGTAATTTCAGTTTGGATCTAGCTCACTTATGGCGATTAATGAAGCTTTGCAGGGTGAAAGCAATTTGTTGGGTTTCAAGCCGTTTTTAGCCAGCTAACAACGATTGGCGTTAATTCCGCATCAATTTTGTATATATTTGGTTATGCATTTGCTGTCGGCATCACTCTGTAACCGGTGAATACACTTTGTGTTAGGTTTAGAAGGGTCTGTAATTGCAGATGTTTTGTTTTTGAAATCAGTGCGATGCACTATTCTTTTCCCCGATTCAAGAAGATATTTTTTTCGTTCTGAACTTGGGCCGTGTTACTACTAGTGTTTTGTGTGACTGACAGGGAGTGTCCTGATGAGTGTTAATAGTGATGAGGACAAACAACTGTTGGAACTGGACCACCGCTCATGGGAGGGTGAGGGGAAGAGGGGTAACAATGGAGTGGAGGATGAGGAAAGGAGGCTAGTGGAGGAAGATGAGTCGAAAAGTAATGGAAGAGCTGGAGATGTAAAAGGTCGGCAAGGAGGGGCTGTTCAAGCCCAGACTGTTACGCAACAGCCTCAAGGGTCAACGGTATGCTGGGAGAGGTTTCTACCACTAAGATCTCTTAAGGTTTTACTGGTGGAATATGATGATTGCACTCGCCATGTTGTCACCGCACTGCTTCGCAATTGCAGTTATGAAGTGATTCCGGTAGCAAATGGAGTGCAAGCATGGAAGATTCTTGAAGATTTGACTAATCATGTTGATCTAGTATTAACTGAGGTAGTCATGCCGTGCGTATCTGGCGTTGGTCTTTTAAGCAAGATTATGAACCATAAGACCCGGAAAAATGTTCCTGTGATTATGATGTCGTCTCATGATTCAATGGGTCTCGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTTTGGTGAAGCCTATTCGAAAGAATGAGCTTAAGAACCTCTGGCAGCACATTTGGAGGAGATGCCATAGTTCTAGTGGCAGTGGTACTGGAAGTGAAAGTGGCACACAAACTCAAAGGTCCATAAGATCAAAAAGTGTTGAAAAGTCCGGGAACAATAGCGGAAGCAATGATGAGGAAGATAATGTAAGCACTGATTTGAATATTGGAGATGGAAGTGACAATGGGAGTGGCACTCAGAGTTCGTGGACAAAAAAAGCTGTAGAAGTTGACAGTCCTCGACATGCATATTCATGGCCCCATCCCGATAGTACTTGTTGCCAGCAACAGAAGGAACAAAATGACAACTTTGCAATGGGAAAAGATCTGGAGATATGCCTGACCGGTACTAAAGATTTACAGCACGGGCAACGTAATGATTTTTCAACAAAACTAGCAGGAACAAGACAGAATAATCTGCTTGAGACAGGTTCCTGTAAACGTGACGAGAAAATTGATAAGGGCAAGCTGAATTTGAATCATGAGAGTCCTTCGAGCATGCTAAAGTATGATGGTGCTACTGTAACAGGTGTTGTCACTAATCCCACTGATTCCCAGATGGACAACACACAATTTGAAGCTTCTAACAGACATTATAACGCCTTAGATGTTAACAATAAGGTGAATAGTGATACTCATGAACTACCATCCGTGGAGCTCAGTTTGAAAAGGCTTAGAGGAGTCGAAGGCACCGAGACAACAGTACAAGATGACCGCAATGTCTTGAGACGTTCAGACTATTCAGCCTTTTCAAGGTATAATGCAGCCTCAAATGCTAACAAGGGTCCTTCTGGGCATGTCGGAAGCAACTCTCCACATGATAATAGTGGAGAAGTTACAAAAAAGGAATTCTCTTGTGACATTCGATCTCATTCAAGAGATAACCCTCCCAATCAATGCTCGATTGGAGGCAGAAACATCAACGATATGGGGTCTACTACTAATAACGATGTTCCGAAATCTCAAGTTGCAAACAAGTCAGCAGCAGCAGCAGCATCCACAGTCCAACTTTTGCATCCATCATCTGCTTTCCATCCTGTGAAGGACCTTAAGAGTGCTACCGAACATGTTATAGTAGATAATGCTAATGATGTGGAAACAGCAATACGAATTCAATCAAGAGACACCCAGAAGCAACTGCAAATTCAGAACCTCCATCATGATTATGATCAGTATCGGGTCCATCACCATGTTGTCTACAATAAGCAAGAGCAACATCTTCGTGACAATAATGATTTATCTTTAAATAAATTGGCTGCAGCTGCCCCACATTGCGGATCATCCAATGGGACTGGGCCTGTTGAAGGCAATCCTGGAAATTATAGCATCAATGGGAGTGGTTCAGGCAGCAACCATGGGAGCAATGGGCAAAACGGAGGCAGCGGTGGACATAATGTTGGAGGTACAAACCTAGAAAGTGATTATGGAGTTGCTGGGAAAAGTGGAAGTGGTGATGGTAGCGGAAACCAGAGTGGAAATAGAGTAGATGAAAACAAGAAGCAGAGAGAAGCTGCCTTGACCAAGTTCCGTCAGAAAAGAACAGAGAGATGCTTCCGGAAAAAGGTTCGGTATCAGAACAGAAAGAAACTGGCAGACCAACGGCCTCGCATTCGAGGACAGTTTGTGCGGCATACAGTGAGTGAGAACACGAGCAGGACAACAGATATCTAACTCGACACTTCCGGTAACATAGGGTTGAAATTTGGTGATTACTTGTGAGCTGTTATCAGTTAAATGTATATGTACATTTTCTTGCAACTCCTACGAGCAAGGCGCTACGTAAATATTTGTGTGGAGAGATTTGAAGGTGTAGGGCGTGAAAACTCCAGACAGACAACACCTTGTAACCGCATTCGATTAATGTGGATTTCAAATTGCTTCTTTTAGACGAGAGGCCATCAGCTTTATGCTTTCAGTGTTTTTATTTGGTCTGGTATTATTTTATTCCCCTGCCAATAATTAGAAATTTTTGTTTTCATGTTGAAAGAAGAAGGCTTTTTCAATTCCCTCTCTAGACTTTGGTCTCTCGGTGTTAGGCCGTGAGCCGGCCAACATTTCGCTTGAGGTAAGGTTGTTTTCACCGGAGAATAATGTGAGTTCTGGTATATCTCTTTACTGCAGGCCGGTTGGCCAAGGCAGTTTGCCGGCCATCTTGCATCTGAGTTCAAATTTCTCTCTTCATTAGAGTAGTTGAAGGAAAAACGCTATTTCTTTACCAATGTATAC

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	Pseudo ARR-B

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G02810.1	1	APRR7;PRR7\|pseudo-response regulator 7
Pyrus communis	PCP012225.1	1	-
Pyrus x bretschneideri	Pbr008279.1	1	-
Vitis vinifera	GSVIVT01032644001	1	pseudo-response regulator 7
Solanum lycopersicum	Solyc10g086000.1.1	1	pseudo-response regulator 7
Populus trichocarpa	Potri.010G215200.1	1	pseudo-response regulator 3
Nicotiana benthamiana	Niben101Scf05009g04012.1	1	pseudo-response regulator 7 LENGTH=727
Oryza sativa	LOC_Os07g49460.3	1	"response regulator receiver domain containing protein, expressed"
Oryza sativa	LOC_Os03g17570.5	1	"response regulator receiver domain containing protein, expressed"
Zea mays	GRMZM2G033962_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0000160	phosphorelay signal transduction system	biological_process
GO:0000156	phosphorelay response regulator activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.20	Response_reg	87	198	2.70E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	34.9345
SRR5252888	dormant buds	no	dormant buds(0 month)	37.5457
SRR5252889	dormant buds	no	dormant buds(0 month)	41.6519
SRR5252886	dormant buds	no	dormant buds(1 months)	34.233
SRR5252887	dormant buds	no	dormant buds(1 months)	29.1505
SRR5252884	dormant buds	no	dormant buds(2 months)	47.1587
SRR5252882	dormant buds	no	dormant buds(3 months)	34.0947
SRR5252883	dormant buds	no	dormant buds(3 months)	26.1277
SRR5252880	dormant buds	no	dormant buds(4 months)	30.5938
SRR5252881	dormant buds	no	dormant buds(4 months)	28.3543
SRR5252878	bud break	no	bud break	34.0928
SRR5252879	bud break	no	bud break	25.0083
SRR3744766	flower	no	mature	19.589
SRR3744767	flower	no	mature	21.3311
SRR3744768	flower	no	mature	20.3397
SRR6308190	stigmas	no	open flowers	22.6717
SRR6308181	styles	no	open flowers	19.6692
SRR6308188	filaments	no	open flowers	11.6154
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	16.507
SRR6308192	pollen	no	open flowers	2.45399
SRR6308191	petals	no	open flowers	14.6958
SRR6308194	sepals	no	open flowers	16.8448
SRR6308193	receptacles	no	open flowers	15.2711
SRR6308189	ovaries	no	open flowers	17.2617
SRR3384922	fruit	no	1 week after full bloom	12.6667
SRR3384921	fruit	no	2 week after full bloom	11.8401
SRR3384920	fruit	no	3 week after full bloom	19.4517
SRR3384919	fruit	no	4 week after full bloom	19.951
SRR3384923	fruit	no	5 week after full bloom	23.2358
SRR3384918	fruit	no	6 week after full bloom	12.3593
SRR3384917	fruit	no	8 week after full bloom	13.0322
SRR3384916	fruit	no	10 week after full bloom	18.3373
SRR3384915	fruit	no	12 week after full bloom	25.4432
SRR3384914	fruit	no	14 week after full bloom	14.7725
SRR3384913	fruit	no	16 week after full bloom	11.3293
SRR3384912	fruit	no	18 week after full bloom	13.1784
SRR3384911	fruit	no	19 week after full bloom	15.0568
SRR3384910	fruit	no	20 week after full bloom	15.4756
SRR768128	whole fruit	no	25 days post anthesis	47.6471
SRR768129	whole fruit	no	35 days post anthesis	14.6494
SRR768130	whole fruit	no	60 days post anthesis	16.4617
SRR768131	whole fruit	no	87 days post anthesis	17.2997
SRR7343308	immature fruit flesh	no	immature	36.8921
SRR7343309	immature fruit flesh	no	immature	32.6084
SRR6320494	ripe fruit flesh	no	mature	23.9355
SRR5405143	ripe fruit peel	no	mature	25.6589
SRR6320572	ripe fruit peel	no	mature	20.6627
SRR7403504	fruit	uninfected	mature	18.7521
SRR7403506	fruit	uninfected	mature	19.3637
SRR7403507	fruit	uninfected	mature	17.4911
SRR7403500	fruit	infected with penicillium expansum	mature	26.241
SRR7403501	fruit	infected with penicillium expansum	mature	28.688
SRR7403508	fruit	infected with penicillium expansum	mature	25.742
SRR7403502	fruit	infected with penicillium expansum	mature	22.7736
SRR7403503	fruit	infected with penicillium expansum	mature	21.6633
SRR7403505	fruit	infected with penicillium expansum	mature	24.6165
SRR1613973	Central seeds	no	20DAPF	7.38539
SRR1613974	Central seeds	no	20DAPF	8.34446
SRR1613975	Central seeds	no	20DAPF	7.74891
SRR1613976	Lateral seeds	no	20DAPF	6.47335
SRR1613977	Lateral seeds	no	20DAPF	7.07535
SRR1613978	Lateral seeds	no	20DAPF	7.34483
SRR3744786	stem	no	mature	29.6142
SRR3744787	stem	no	mature	28.5775
SRR3744772	stem	no	mature	31.7624
SRX765691	seedling shoot apex	no	4-6 week old seedling	33.4316
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	51.9065
SRR1089478	leaf	Virus-free	plantlets	11.5617
SRR1089477	leaf	ASGV-infected	plantlets	14.5336
SRR767660	leaf	uninfected	fully developed	16.6975
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	27.9497
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	16.4856
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.3962
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	13.134
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	18.9585
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	12.2984
SRR6308182	young leaf	no	immature leaves	22.023
SRR3744769	leaf	no	mature	27.074
SRR3744770	leaf	no	mature	26.7347
SRR3744771	leaf	no	mature	26.4111
SRR5405145	leaf	no	mature	32.5444
SRR6320561	leaf	no	mature	35.0925