Gene detail

Detail information of MD12G1133600 Annotation

Gene ID	Annotation
MD12G1133600	UDP-glucuronic acid decarboxylase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0624	GT68 peptide-O-fucosyltransferase [EC:2.4.1.221] adenosylhomocysteinase [EC:3.3.1.1] trans-Golgi network endosome UDP-glucuronate decarboxylase [EC:4.1.1.35] glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity UDP-glucuronate decarboxylase activity FGP

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1133600	mRNA	Chr12	20912406	20915248	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G247300.1.p	1	UDP-glucuronic acid decarboxylase 1
Pyrus communis	PCP044378.1	1	-
Pyrus x bretschneideri	Pbr017634.1	1	-
Solanum lycopersicum	Solyc10g085920.1.1	1	UDP-glucuronic acid decarboxylase 1
Solanum lycopersicum	Solyc12g099480.1.1	1	UDP-xylose synthase 4
Solanum lycopersicum	Solyc01g097340.2.1	1	"GDP-D-mannose 3',5'-epimerase"
Solanum lycopersicum	Solyc03g118270.1.1	1	NAD(P)-binding Rossmann-fold superfamily protein
Populus trichocarpa	Potri.016G080500.1	1	UDP-glucuronic acid decarboxylase 1
Nicotiana benthamiana	Niben101Scf00059g02013.1	1	UDP-glucuronic acid decarboxylase 1 LENGTH=458
Oryza sativa	LOC_Os03g17230.1	1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"
Zea mays	GRMZM2G359234_P01	1	-
Zea mays	GRMZM2G370048_P01	0.635	-

Gene Ontology

GO term	Description	Category
GO:0050662	coenzyme binding	molecular_function
GO:0044237	cellular metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
K08678	UDP-glucuronate decarboxylase	EC:4.1.1.35

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.1	GDP_Man_Dehyd	120	425	1.00E-56

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	10.852
SRR5252888	dormant buds	no	dormant buds(0 month)	5.72956
SRR5252889	dormant buds	no	dormant buds(0 month)	7.57601
SRR5252886	dormant buds	no	dormant buds(1 months)	6.91068
SRR5252887	dormant buds	no	dormant buds(1 months)	5.62572
SRR5252884	dormant buds	no	dormant buds(2 months)	4.36736
SRR5252882	dormant buds	no	dormant buds(3 months)	5.25627
SRR5252883	dormant buds	no	dormant buds(3 months)	4.36388
SRR5252880	dormant buds	no	dormant buds(4 months)	3.9968
SRR5252881	dormant buds	no	dormant buds(4 months)	3.67379
SRR5252878	bud break	no	bud break	11.3208
SRR5252879	bud break	no	bud break	9.65653
SRR3744766	flower	no	mature	7.74275
SRR3744767	flower	no	mature	6.80213
SRR3744768	flower	no	mature	7.93297
SRR6308190	stigmas	no	open flowers	9.42066
SRR6308181	styles	no	open flowers	10.2301
SRR6308188	filaments	no	open flowers	24.3421
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	10.9629
SRR6308192	pollen	no	open flowers	29.3301
SRR6308191	petals	no	open flowers	18.7148
SRR6308194	sepals	no	open flowers	10.5013
SRR6308193	receptacles	no	open flowers	5.07548
SRR6308189	ovaries	no	open flowers	10.5853
SRR3384922	fruit	no	1 week after full bloom	10.6621
SRR3384921	fruit	no	2 week after full bloom	15.2823
SRR3384920	fruit	no	3 week after full bloom	21.8875
SRR3384919	fruit	no	4 week after full bloom	23.2127
SRR3384923	fruit	no	5 week after full bloom	22.026
SRR3384918	fruit	no	6 week after full bloom	29.5982
SRR3384917	fruit	no	8 week after full bloom	27.8311
SRR3384916	fruit	no	10 week after full bloom	32.6725
SRR3384915	fruit	no	12 week after full bloom	32.7198
SRR3384914	fruit	no	14 week after full bloom	29.5592
SRR3384913	fruit	no	16 week after full bloom	27.4096
SRR3384912	fruit	no	18 week after full bloom	29.9446
SRR3384911	fruit	no	19 week after full bloom	22.9265
SRR3384910	fruit	no	20 week after full bloom	31.0237
SRR768128	whole fruit	no	25 days post anthesis	12.263
SRR768129	whole fruit	no	35 days post anthesis	22.7539
SRR768130	whole fruit	no	60 days post anthesis	31.6611
SRR768131	whole fruit	no	87 days post anthesis	33.7939
SRR7343308	immature fruit flesh	no	immature	12.8079
SRR7343309	immature fruit flesh	no	immature	15.2007
SRR6320494	ripe fruit flesh	no	mature	6.94556
SRR5405143	ripe fruit peel	no	mature	9.0879
SRR6320572	ripe fruit peel	no	mature	21.7676
SRR7403504	fruit	uninfected	mature	11.9009
SRR7403506	fruit	uninfected	mature	11.4037
SRR7403507	fruit	uninfected	mature	11.7863
SRR7403500	fruit	infected with penicillium expansum	mature	40.7593
SRR7403501	fruit	infected with penicillium expansum	mature	38.0375
SRR7403508	fruit	infected with penicillium expansum	mature	38.7489
SRR7403502	fruit	infected with penicillium expansum	mature	41.4971
SRR7403503	fruit	infected with penicillium expansum	mature	44.8739
SRR7403505	fruit	infected with penicillium expansum	mature	42.6392
SRR1613973	Central seeds	no	20DAPF	10.7081
SRR1613974	Central seeds	no	20DAPF	10.165
SRR1613975	Central seeds	no	20DAPF	12.3342
SRR1613976	Lateral seeds	no	20DAPF	11.4401
SRR1613977	Lateral seeds	no	20DAPF	10.2021
SRR1613978	Lateral seeds	no	20DAPF	9.45339
SRR3744786	stem	no	mature	2.21439
SRR3744787	stem	no	mature	2.11091
SRR3744772	stem	no	mature	1.89216
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.2456
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.1834
SRR1089478	leaf	Virus-free	plantlets	16.202
SRR1089477	leaf	ASGV-infected	plantlets	15.186
SRR767660	leaf	uninfected	fully developed	17.117
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	24.0423
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.6637
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.42257
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	12.6126
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.2433
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.2038
SRR6308182	young leaf	no	immature leaves	7.53007
SRR3744769	leaf	no	mature	2.81393
SRR3744770	leaf	no	mature	3.16794
SRR3744771	leaf	no	mature	3.12093
SRR5405145	leaf	no	mature	15.4316
SRR6320561	leaf	no	mature	6.6302