Gene detail

Detail information of MD12G1151800 Annotation

Gene ID	Annotation
MD12G1151800	transferases

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0362	transferase activity triose-phosphate isomerase activity serine/threonine-protein kinase ULK2 [EC:2.7.11.1] triosephosphate isomerase (TIM) [EC:5.3.1.1]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1151800	mRNA	Chr12	23164513	23169859	+

Sequences

CDS:

MD12G1151800

TGAACAATGACTTGGGTTGGATTTTGAGTTATTTACAAAATTGCCATTTCTACTTTTGATCCACGGGTGTGACTGTGAGCCGTGCTTCGGCCAAAACAGGTGGTGCTTTGCAATTTTCATCTCTTCCATACTCAAACCCTAGCCGATCCACCTCTTTCTCTCATCTCCCTTCCCCAACCTCCACCACCACAAAACATCAAAATCTCCTTCGAAGACGACTCAGTCCCGACCACCGGGTCAACTCGCCCGTTCGACGACGACGGTTACCTGGGCTAGGACCCCCGACTCTCCTCCCAGCGATTCGACTCCTTCGTCGACTCCGACGAACTCAGGGACTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCGTAGACGACTTTTTCGCCACTCAGCCGGCGTCGGAGGCCTTCTCTTCTCTGTCGATCTACGCCTAACCGAACGGCCAGGGCTTCTCTCAGACAGAGGTGTTGATGTGTCCTTAATGGACGACTTCGAATCGAATACCGCAGCCGATGGGTACGTGAAGAGATTGGAATACTGATTCTTCTCTCTTCAGGGTTCATGGATTGTTAAGCAGAGTTCGGAAAGAAAGGGTGCCTCACTGGTTAGGCACTTGAAAATTTGAAATCAATTATTTCCATCGGAAGAACTACTTGAAGTACGTTTGGGAACAAGCTGAAATTGATATCATTGAGCGCAAGACAAGAATAAGCCTCCATTTCCATCCCAAAAAGCAGCAGAAAAAAATTAAACAAGCATTTTCATACAGCTGGAGGCTGTGGTCACTGCCTGAGATCAAAGACTACTTAGAAGAGGCAGCCTTTAAGTCCGTTCATTTTTTACTGCCTCCTACCAAACCCAAATGCCTCCTACCAAATCCTCACCGAAACTCCACCATGAAGCCACAGTGATCAGATCAGCAATCCAGTCCAGACTCCTGGTCCTGACTCTAATCCTCCTATGGCGGACTCTCTTGTCCTCGTACGACACCTCCGCCCCCATCAATCCCGATTGCCTATCTACCATCCCTGCACAAAAAAACGTTCTCTTTCATTCCCTGGGTTTGGCTATCGAGTCCAGCATTGTATGGGACAGTGTCTACTATGTCCGGATTGCAGAGTGTGGCTACGAGTACGAGCAGACCTATGCTTTCTTCCCCCTTCTTCCTCTTTGCATGTCGTTCTTATCCCGCACAGTTTTGGCGCCATTGGTTCCAGTTATTGGGCAAAGAGCTGTGTTGGGATTATCCGGCTATGTGATTAATAACATTGGCTTCGTGTTTGGGGCAGTTTATTTATACAGGCTTTCAGTTGTCATTTTGAAGGACCAAGAAGCAGCAGTGAGGGCTTCGCTTTTGTTTTGCTTCAATCCAGCTTCCATATTCTATTCATCAATATATTCAGAGACATTGTTCGCCCTTTTTTCAGTTGGTGGATTGTACCATCTAATATCTGGAAAAGATGTCATTGCTGTTCTTTGGTTTGCTCTTTCGGGATTTTCAAGGTCCAATGGAGTGCTTAATGCTGGTTATTTCTGTTTTCAGACTATGCATCAGGCCTATGATGCTGTTTTCTTGAGAAAGCGCCCTTTTTTGGCATTGCAGGCTGTTGTTGGTGGAGCTCTGCGCTGTATATGTATATTTGTTCCTTTTATTGCATTTCAAGCATATGGATACAACAATCTCTGTCTTGGACATCTTCCATCCGATATGAGGCCCTGGTGCAATGCAAGGGTACCTTTGTTGTACAATTATATTCAAAGTCACTATTGGGGAGTAGGTTTCTTGAGATACTTCCAAGTTAAACAGTTGCCAAACTTTCTGCTGGCGTCACCAATATTGTCTCTGGCACTTTGCTCAATCATTCATTACGCGAAGTCAAAGCCTGAAAATTTCTTCTCTTTGGGTTTCCGTGCTCCTCCTGAGGACAAAGATTCTGCTGCTGTGCTCTTTTCTCTAACAGAATACTCCTCCAGAAAAAATCGCACAAGGAAGCAAGCGAACAAAGATGGTCCTGCTTTACTCTCAGAAGAACATAAAGCATTAGCAAAGCAAGGATACTTGTCTGTTGCTGTGCTTCCATGTATTCTACATTTGGGATTTATGGCAGCCACCGCATTTTTTGTCATGCATGTGCAGGTTGCTACTCGTTTCTTATCCTTCAGCCCTCCCCTCTATTGGTTTGCGTCGTATATAATGAAATCTCGTGGTACTGGTAAGCGATGGGGATATATAGTTTGGGTATACTCTGCTGCGTACATTCTTCTAGGCAGTTTGCTCTTTCCGAACTTCTATCCTTTCACTTGATAGTGTACGGCAAGGAGTCTCAGCTGAGAGCTTTTCTATCGAAGAGTTTGTGCCTTCACAGCGTCAGATTGAATTTGCATACTGAAGGATATTCTTCTATTGTTTGGGGAGTCCCACGGCCTAATATCTTTAGTTGCTTGCCTCCATGTATAAGCATGGTGCGACTGTTGGCCCCGAAGAGGCTAGAGTTTTGTTCTTTTCCGCATGTTATATATAGTTTTTACAAAGAC

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT76

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G11880.1	1	"transferases, transferring hexosyl groups"
Prunus persica	Prupe.6G010000.1.p	1	"transferases, transferring hexosyl groups"
Pyrus communis	PCP031965.1	1	-
Rosa multiflora	Rmu_sc0002706.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0014139.1_g000005.1	0.723	-
Fragaria vesca	mrna24756.1	1	"transferases, transferring hexosyl groups"
Vitis vinifera	GSVIVT01025407001	1	"transferases, transferring hexosyl groups"
Populus trichocarpa	Potri.003G216900.1	1	"transferases, transferring hexosyl groups"
Nicotiana benthamiana	Niben101Scf02350g02013.1	1	GPI mannosyltransferase 2
Oryza sativa	LOC_Os12g31480.1	1	"GPI mannosyltransferase 2, putative, expressed"
Zea mays	GRMZM2G021422_P01	1	-
Zea mays	GRMZM2G018923_P01	0.672	-

Gene Ontology

GO term	Description	Category
GO:0006506	GPI anchor biosynthetic process	biological_process

KEGG

KO	Description	Enzyme
K07542	"phosphatidylinositol glycan, class V"	EC:2.4.1.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.69119
SRR5252888	dormant buds	no	dormant buds(0 month)	8.5684
SRR5252889	dormant buds	no	dormant buds(0 month)	11.1024
SRR5252886	dormant buds	no	dormant buds(1 months)	8.38505
SRR5252887	dormant buds	no	dormant buds(1 months)	12.125
SRR5252884	dormant buds	no	dormant buds(2 months)	11.4266
SRR5252882	dormant buds	no	dormant buds(3 months)	9.12704
SRR5252883	dormant buds	no	dormant buds(3 months)	11.628
SRR5252880	dormant buds	no	dormant buds(4 months)	10.958
SRR5252881	dormant buds	no	dormant buds(4 months)	9.84438
SRR5252878	bud break	no	bud break	8.93625
SRR5252879	bud break	no	bud break	6.31625
SRR3744766	flower	no	mature	15.0261
SRR3744767	flower	no	mature	14.9063
SRR3744768	flower	no	mature	15.3947
SRR6308190	stigmas	no	open flowers	10.9726
SRR6308181	styles	no	open flowers	10.4392
SRR6308188	filaments	no	open flowers	11.0451
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	16.904
SRR6308192	pollen	no	open flowers	45.6743
SRR6308191	petals	no	open flowers	10.6039
SRR6308194	sepals	no	open flowers	12.3306
SRR6308193	receptacles	no	open flowers	9.41328
SRR6308189	ovaries	no	open flowers	8.98599
SRR3384922	fruit	no	1 week after full bloom	4.68951
SRR3384921	fruit	no	2 week after full bloom	4.58936
SRR3384920	fruit	no	3 week after full bloom	4.40837
SRR3384919	fruit	no	4 week after full bloom	6.44842
SRR3384923	fruit	no	5 week after full bloom	6.72412
SRR3384918	fruit	no	6 week after full bloom	7.03621
SRR3384917	fruit	no	8 week after full bloom	5.9654
SRR3384916	fruit	no	10 week after full bloom	7.86186
SRR3384915	fruit	no	12 week after full bloom	9.23563
SRR3384914	fruit	no	14 week after full bloom	7.66843
SRR3384913	fruit	no	16 week after full bloom	7.85567
SRR3384912	fruit	no	18 week after full bloom	9.47338
SRR3384911	fruit	no	19 week after full bloom	6.59254
SRR3384910	fruit	no	20 week after full bloom	8.23744
SRR768128	whole fruit	no	25 days post anthesis	7.86137
SRR768129	whole fruit	no	35 days post anthesis	5.06069
SRR768130	whole fruit	no	60 days post anthesis	7.34393
SRR768131	whole fruit	no	87 days post anthesis	9.01627
SRR7343308	immature fruit flesh	no	immature	11.9468
SRR7343309	immature fruit flesh	no	immature	7.7547
SRR6320494	ripe fruit flesh	no	mature	10.2011
SRR5405143	ripe fruit peel	no	mature	16.2643
SRR6320572	ripe fruit peel	no	mature	6.82521
SRR7403504	fruit	uninfected	mature	11.8743
SRR7403506	fruit	uninfected	mature	12.9019
SRR7403507	fruit	uninfected	mature	12.4969
SRR7403500	fruit	infected with penicillium expansum	mature	11.5375
SRR7403501	fruit	infected with penicillium expansum	mature	10.4098
SRR7403508	fruit	infected with penicillium expansum	mature	10.8122
SRR7403502	fruit	infected with penicillium expansum	mature	14.6576
SRR7403503	fruit	infected with penicillium expansum	mature	13.1312
SRR7403505	fruit	infected with penicillium expansum	mature	14.8692
SRR1613973	Central seeds	no	20DAPF	4.90277
SRR1613974	Central seeds	no	20DAPF	5.39592
SRR1613975	Central seeds	no	20DAPF	4.05295
SRR1613976	Lateral seeds	no	20DAPF	3.26812
SRR1613977	Lateral seeds	no	20DAPF	3.56241
SRR1613978	Lateral seeds	no	20DAPF	3.89554
SRR3744786	stem	no	mature	18.7259
SRR3744787	stem	no	mature	19.054
SRR3744772	stem	no	mature	21.2734
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.2517
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.6133
SRR1089478	leaf	Virus-free	plantlets	3.03418
SRR1089477	leaf	ASGV-infected	plantlets	3.26619
SRR767660	leaf	uninfected	fully developed	3.5817
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.69073
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.43486
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	2.36675
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.6048
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	6.48416
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.76238
SRR6308182	young leaf	no	immature leaves	10.1894
SRR3744769	leaf	no	mature	16.8556
SRR3744770	leaf	no	mature	18.8521
SRR3744771	leaf	no	mature	19.69
SRR5405145	leaf	no	mature	17.0576
SRR6320561	leaf	no	mature	6.91397