Gene detail

Detail information of MD12G1186000 Annotation

Gene ID	Annotation
MD12G1186000	with no lysine (K) kinase 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1186000	mRNA	Chr12	26752563	26756573	-

Sequences

CDS:

MD12G1186000

TTTTTTTCTATCCATATTATTGTTGCTTGCAAAATTTGCAAGGCTCCCATATCTTTCCAAACTCACGAGTCTCTCTCAAACTAATCAAATCTCAATTTTTTTTCCATAATTTTGATTGTTATTACGGTTTTTATTACATCCACAAATGGTACCATCAAAGCACAGCCACAGATTCTTCAAGTTCAGGATTAATATTCCAGTTCCATGCCAAAATCCAACATGTGCTCATTTGATACTCTAAGTTTTTTGATATTATTGGGAAAACAGTCCTCCTCCACAAGCTAGGTTCAATTTATTTCCAGTACATTAGTTGACAAATATTGTTCTCTCTTCCCTACCACACCCTACATCTCAACAGTTTGCTCCATTTAGTCTGTCCTTTTCTGAAAAAAAATCTTTGATTAGAATCGGATCTTCTTCTCTTCCTCTATATTTAAATTCCTTGGTACACCTTCATCTTCTACCCAAATGGTTACCAAAAACTACGAAAGATCGTGTGGTGTTGTGGAAATGGCTTGGATCATGCTCAGCGTTGATTACTCGAGGCTTTTCTGGTTGCTGTATAGAGTCTTCTCTTATGAAAATCATGAGGGAAAGCCTCGGATTTCCTAGCACGTAGAGAAAAGTCTTCCACAAGCCTCATAGTAAGTTAGTTAGTGTTGAATTATAAGTTTATAATTACGAGGTATTGCGTACGTACTACGTAGTATATAATCAAGTGAAAAGCTGCTGGGACTTGTTTGTGGTCGGAGAGTTTCAAAGGGTTGCTTGATTAGTTCTCAACCATGAACAAGAACAACAGCCGGATCGGAAGCAGGTCTGCCAATGGAGGCAGGCCACAATCACCTGCTTACGTTGAAACTGATCCATCTGGTCGCTATGGACGTTTCAGGGAAATGCTTGGCAAAGGAGCCATGAAGACAGTTTACAAGGCATTTGATGAGGTCCTCGGAATGGAGGTGGCTTGGAATCAAGTCAAGCTTAATGATGTCTTTACTTCACCGGACGAACTTCAGCGCCTATACTCCGAGGTTCACCTCCTCAAGAACCTCAATCATGACTCCATCATCCAATACTACGCATCTTGGATCGATGTTAATCGCCGAACCTTCAACTTCATCACCGAAATGTTCACCTCCGGCACTCTCAGAGAGTACAGACAGAAATACCAGCAAGTGAATATTGGAGCAGTGAAAAATTGGTCCCGACAGATCTTGCGTGGTCTGGCTTATTTGCACAAACTTGATCCACCTGTGATTCACAGAGACCTCAAGTGTGACAACATCTTTGTTAATGGCCACCTAGGGCAAGTCAAGATTGGTGATTTGGGCTTGGCTGCTATTCTTCGTGGTACGCAACACGCCCACAGTGTCATAGGTACACCAGAATTTATGGCGCCTGAATTGTACGATGAGGAATACAATGAGCTGGTAGACATATATGCCTTTGGCATGTGTGTGTTGGAAATGCTTACTTCAGAATATCCCTATAGCGAGTGCTCAAATCCTGCCCAAATTTACAAGAAAGTTACTTCAGGGAAGCTACCAAACGCATTCTACAATATTGAAGATTTGGAGGCTCAACGATTTGTAGGGAAGTGTCTGGAGAATGTTTCAAAGAGGTTGCCGGCACATGAGCTATTGCTAGACCCTTTTCTAGCCTCTGATGATGGAGAGCTAGCGTCTTCCCCAAGAATCCCATTTCTGAAGTTAATTCCTGATAATGATCCAGTCGTGGAGGCAGAGGATGAGGAGGATGAGCTACATTTTGCCGCTGAGGTTGATTTGGAAAGAAGCACAAACATGATCATCACTGGAAAAATGAATCTAGAGGATGATACTATTACTCTCAAAGTTCGAATTTCTGACCTGGACGGGAAAAATGTTAGGAACATATACTTTCCCTTCGACATTTTGAACGACACTGCGATTGAAGTAGCAACGGAGATGGTGAAAGAATTAGAAATCAATGACTGGGAACCGCCAGAGATCGCAGGGATGATAGAAAACGAGATATCTTCTTTGATTGCGGGTAGTAAGAAATGGGGCTCACCCCGAGATTATCATCCTCATCAGCACAGCTTTAACTATGAAGAAGAAGATGATAATAATAATGGTGGTATCACCCATCATCCTTTCTACGCATTCTCTTCCTGCTCTTCATCCCAAAATTCTCTTCATGCTTTGAGCTTTCACTGCAAGAATCATGATTCGCTTCAAGGTGATCTGTTTATGAATGATGATGTGAGTTCTCAGAGTTCATTCGACTCCTGCAACTACTCCAACATAAGTTACTACTCAGGCAATGAAGATGATCTCCTTGACATGAGCTTCGGAAAGACTACTCACAAATCTACTCGGTTTTGTCCTTCAAAAAGCAGGGTTGCAAATACTTACAAACATTGCAATTCACAACTAGATAACCACAGACCTCAAAAATTGAATCATCATCATGAAAGAAAATTACCCAAAATTCAATCACTCATTGACGTGCACAGCCAATTGTTGCACAGGTCACTGGTGGAGGAGGTAAACAAGAGGTGGTTGTTTAAGACTGTTGGGACAATTGAGAACGTTGGGTTTCAAACACCAGGAAGCTAGCAGTTGTAGTTTCCTTGGGAGGCAAGTAACAAGTTTCTTTACACTTGCAATGTACTAGTGTGTGCGTAAATAAATAATTGTTGTTAAAACGTTCGAGCCATAAGAAGATTTTATGGTTCATGATAATAACCGTTGTAGATTATGATTGTTATGAACCTGAGACATAATTCTGCGTAGTGGACTTCTCTTTTGTGTAAAATTTGTTGGGTTTCGTATGCCGCTTATTAACTTATTGTGT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.1.5.1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G291500.1.p	1	with no lysine (K) kinase 5
Pyrus communis	PCP003660.1	1	-
Pyrus x bretschneideri	Pbr014620.1	1	-
Rosa multiflora	Rmu_sc0007678.1_g000013.1	1	-
Rubus occidentalis	Ro06_G05699	1	-
Fragaria vesca	mrna13854.1	1	with no lysine (K) kinase 5
Vitis vinifera	GSVIVT01030202001	1	with no lysine (K) kinase 5
Populus trichocarpa	Potri.016G134600.1	1	with no lysine (K) kinase 5

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
K08867	WNK lysine deficient protein kinase	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	37	291	1.40E-46

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	17.3204
SRR5252888	dormant buds	no	dormant buds(0 month)	0.759196
SRR5252889	dormant buds	no	dormant buds(0 month)	0.684045
SRR5252886	dormant buds	no	dormant buds(1 months)	0.214313
SRR5252887	dormant buds	no	dormant buds(1 months)	0.493507
SRR5252884	dormant buds	no	dormant buds(2 months)	0.363752
SRR5252882	dormant buds	no	dormant buds(3 months)	0.182412
SRR5252883	dormant buds	no	dormant buds(3 months)	0.662563
SRR5252880	dormant buds	no	dormant buds(4 months)	1.09229
SRR5252881	dormant buds	no	dormant buds(4 months)	0.673554
SRR5252878	bud break	no	bud break	1.45061
SRR5252879	bud break	no	bud break	0.737258
SRR3744766	flower	no	mature	0.831703
SRR3744767	flower	no	mature	0.82542
SRR3744768	flower	no	mature	0.583456
SRR6308190	stigmas	no	open flowers	0.730067
SRR6308181	styles	no	open flowers	0.502967
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.519453
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.698884
SRR6308194	sepals	no	open flowers	7.97046
SRR6308193	receptacles	no	open flowers	0.373957
SRR6308189	ovaries	no	open flowers	0.472989
SRR3384922	fruit	no	1 week after full bloom	1.42296
SRR3384921	fruit	no	2 week after full bloom	0.98577
SRR3384920	fruit	no	3 week after full bloom	0.189872
SRR3384919	fruit	no	4 week after full bloom	0.526242
SRR3384923	fruit	no	5 week after full bloom	2.00181
SRR3384918	fruit	no	6 week after full bloom	2.3876
SRR3384917	fruit	no	8 week after full bloom	5.97493
SRR3384916	fruit	no	10 week after full bloom	5.02535
SRR3384915	fruit	no	12 week after full bloom	2.17822
SRR3384914	fruit	no	14 week after full bloom	7.19412
SRR3384913	fruit	no	16 week after full bloom	7.12848
SRR3384912	fruit	no	18 week after full bloom	6.24793
SRR3384911	fruit	no	19 week after full bloom	8.56504
SRR3384910	fruit	no	20 week after full bloom	2.34598
SRR768128	whole fruit	no	25 days post anthesis	1.75046
SRR768129	whole fruit	no	35 days post anthesis	0.52768
SRR768130	whole fruit	no	60 days post anthesis	3.7284
SRR768131	whole fruit	no	87 days post anthesis	2.75883
SRR7343308	immature fruit flesh	no	immature	2.016
SRR7343309	immature fruit flesh	no	immature	0.335097
SRR6320494	ripe fruit flesh	no	mature	0.323005
SRR5405143	ripe fruit peel	no	mature	0.56116
SRR6320572	ripe fruit peel	no	mature	0.28169
SRR7403504	fruit	uninfected	mature	0.174069
SRR7403506	fruit	uninfected	mature	0.200595
SRR7403507	fruit	uninfected	mature	0.138934
SRR7403500	fruit	infected with penicillium expansum	mature	0.204496
SRR7403501	fruit	infected with penicillium expansum	mature	0.18208
SRR7403508	fruit	infected with penicillium expansum	mature	0.13126
SRR7403502	fruit	infected with penicillium expansum	mature	0.0676555
SRR7403503	fruit	infected with penicillium expansum	mature	0.188915
SRR7403505	fruit	infected with penicillium expansum	mature	0.135849
SRR1613973	Central seeds	no	20DAPF	0.221573
SRR1613974	Central seeds	no	20DAPF	0.275177
SRR1613975	Central seeds	no	20DAPF	0.254363
SRR1613976	Lateral seeds	no	20DAPF	0.338627
SRR1613977	Lateral seeds	no	20DAPF	0.271658
SRR1613978	Lateral seeds	no	20DAPF	0.282208
SRR3744786	stem	no	mature	1.91866
SRR3744787	stem	no	mature	2.11512
SRR3744772	stem	no	mature	1.75163
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0511502
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.171427
SRR1089478	leaf	Virus-free	plantlets	4.117
SRR1089477	leaf	ASGV-infected	plantlets	2.98061
SRR767660	leaf	uninfected	fully developed	18.3838
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.76483
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	14.6862
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.03672
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	1.3995
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	31.3893
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	28.844
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.52224
SRR6308182	young leaf	no	immature leaves	0.418874
SRR3744769	leaf	no	mature	4.22023
SRR3744770	leaf	no	mature	3.95294
SRR3744771	leaf	no	mature	4.4352
SRR5405145	leaf	no	mature	40.6688
SRR6320561	leaf	no	mature	48.8383