Gene detail

Detail information of MD12G1201700 Annotation

Gene ID	Annotation
MD12G1201700	Sec23/Sec24 protein transport family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0113	COPII vesicle coat protein transport protein SEC24 intracellular protein transport ER to Golgi vesicle-mediated transport S-formylglutathione hydrolase [EC:3.1.2.12] S-formylglutathione hydrolase activity nucleoside-triphosphatase activity cytoplasmic MED15SUB ER body organization

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1201700	mRNA	Chr12	28218886	28226904	+

Sequences

CDS:

MD12G1201700

GTAATAGTCTCTCTCTCATCCTCCTCAAATTTCAATCTCTCTCTAAACTCTCTCCCCTCCGGCGGAAGCAAAGGTCTAGGTCATGAGAGCATTGTTTCTACTGAATTAGCAGGTGATTGTAACCAAAGTTATGGGGACTGAAAACCCTAGTCGTCCGAATTTTACTGCAAGACCTGCCACTGCACCTTTTGCGGCTCCTCCTCAAAACATGGTGCCTTTTTCCTCTTCAGGTCCCATGGGTGGACAGGAGGCATATGGTTTTAGACCTCCTCCACCTGTCACGCAACAGACACCTTTTTCATCGTCTGGGCCTGTGGTTGGACCAAATGCCTCTAACTTCAGACCTACTCCATCGGTTCCTCCACAGACTAATGTGCCGTTCTCATCATCTGGATCTGCAGTTGGAACACAAGCCTCTCCTTTTAGGCCTACCCTGCCAGGTAGGTTTCATGATCCATCTGTGCCTCCTCCACCAACTTCAAGTGTCCCGCCAAGTGTTGGACCTTACTCCCGTTTCCCAACACCACAATATCCACCAGCAGTGCAAGCACCCACTGCACGTGGTCCACCTGTAGGCCAAATGCCATATCAACTTCCTCCTGGTCAAGCACCATTTCAACGACCACAACAGCAGATACCTTCTGTGCCAATGGGACCTCCACCTCAAAGCATTAATTCTGCACCACCAAGTGTGAATGCTTTTCAGTCTCCATCAGATTCATCATTCCCAGCTTCCCTACCAAATGCTCAGACATCTCTTCCTGGATTTCCCCGTAAGCAGTCTAGTGCAGATTCACAAGCCCCACCAGCTCAGTCTCCATTTCTTACTCATCAAGGAAGCTATGCAGCTGCTCCACCAGCAGTGTCCTCTCCTTTTGCAGCTCACCAAGGAGGTTATGCTCCACCTACGCAAGGTGCAGCTCCATTGGGTATGTCAAGGGACCACATGCAACATCATGGTTCTGGACCTCCCGTTGGTGCTGTCCAAGCCTTGACAGACGACTTCAGTGCACTATCTATTGGATCTGTTCCTGGATCAATTGAACCTGGACTCGACCCTAAAGCTTTGCCAAGGCCTTTGGCTGGTGACGTGGAGCCAAAATCACTTGCTCAGATGTACCCCATGAATTGCAATCCTAGATTTCTACGGTTTACAACTGGTGCAATACCAAGTTCTCAGTCTTTGTCTTCAAGGTGGCATTTACCTTTGGGAGCAGTTGTTTGTCCACTTGCTGAACCACCTGATGGGGAGGAAGTTCCAATTGTTAATTTTGGTTCAGCCGGGATTATTCGCTGTAGAAGATGTCGGACGTATGTGAACCCCTATGTGACATTTACAGATGCTGGAAGAAAGTGGCGTTGCAACATTTGTGCTTTACTTAATGATGTCCCTGGGGATTACTTTGCTCATTTGGATGCCATTGGCAGAAGAATTGATTTGGATCAACGACCTGAGCTTACACAGGGTAGTGTGGAATTTGTTGCTCCAACTGAATATATGGTCCGGCCTCCTATGCCGCCACTGTATTTTTTCCTCATTGACGTTTCGATATCTGCTGTCAGAAGTGGTATGATTGAGGTTGTGGCCCAAACTATCCGGTCATGCTTGGATGAGCTACCTGGCTTCCCCAGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAATCTTCTTTGACTCAGCCTCAAATGATGGTGGTCTCAGATCTAGATGATGTATTTATTCCATTGCCAGATGATCTTCTTGTTAATCTATCTGAATCAAGAACTGTAGTGGAGAGCTTCCTAGATAGCTTGCCTTCTATGTTTCAAGACAACGTGAATGTGGAGTCTGCTTTTGGTCCAGCTCTTAAAGCCTCGCTTATGCTTATGAGCAACCTTGGGGGAAAATTGTTAATTTTTCAAAATACACTGCCATCTCTTGGTGTTGGTCGCTTGAAGTTGCGTGGAGATGATCTTCGTGTCTATGGCTCTGATAAAGAGCATCCACTAAGACTACCAGAGGATCCTTTCTACAAGCAGATGGCTGCAGAATTTACCAAGTTCCAGATAGGTGTGGATGTATATGCCTTCAGTGACAAGTACACGGATATAGCTTCATTAGGTACTCTGGCAAAATATACCGGGGGTCAGGTGTATTATTACCCGAATTTTCAATCTACCATTCATGGATATAAGTTGAAACATGAATTAGCAAGAGATCTTACTAGGGAAACTGCCTGGGAAGCAGTGATGCGCATAAGATGTGGGAAAGGAGTGCGCTTTACGTCTTATCATGGGAACTTTATGCTAAGGTCCACAGACTTATTAGCACTTCCTGCTGTAGATTGTGATAAAGCATTTGCGATGCAGTTATCTCTTGAAGAGACGCTACTAACTATTCAGACAGTATATTTCCAAGTTGCCTTGCTATACACTGCATCCTGCGGAGAGAGGCGTATTAGAGTACATACAGCAGCAGTACCGGTGGTTACAGATCTGTCTGAGATGTATCGGCAGGCTGATACTGGTGCCATTGTCACCTTGCTTTCCAGGCTAGCAATTGAGAAAACTTTGTCCCATAAGTTGGAAGATGCTCGGAACTCTTTGCAGCTAAGAATTGTCAAAGCCCTCAAAGAATTTCGAAATCTCTATGCCGTACAACACCGCTTAGGAGGGAAGATGATATACTCAGAGTCTCTGAAGTTCTTGCCTTTGTATGGATTGGCACTTTGTAAATCAGCACCTCTTCGTGGGGGGTATGCAGATGTGTCACTTGATGAACGTTGTGCGGCAGGGCACACAATGATGACCTTACCAGTTAAAAAATTGTTGAAGCTCCTATATCCTAGTTTAATACGGCTCGATGAGTATCTTTTGAAGGCGTCTTCTGAAGCTGATGACGTCAAAATCATAGAGAAGAGGTTACCATTACTTGCTGAGAGCTTAGATTTCAGAGGCCTTTATATATTCGATGATGGGTTTCGCTATGTTCTATGGTTTGGTAGAGTTCTTCCACCTGATATAGCTAAGAATCTACTTGGGCCTGACTTTGCAGCAGAGTTATCAAAGGTTACCCTTCGTGAGCACGATAATGAAATGTCAAAGAAGCTAATGAGGATACTAAAGAAACTTAGAGAAAGTGATCCTTCATATTACCAGTTGTGTCATCTTGTAAGACAAGGTGAGCAGCCCCGAGAAGGCCATCTTATACTCGCCAATCTTGTTGAGGAGCAGATGGGTGGAAGCAATGGTTATGTTGATTGGATAATACAAGTACACCGGCAAGTCCAGCAAAATCCGATGTTTATTAAGCTGATAAGATGCCTCATCTGTAGAGTGGTCGAGCATTATTTACCTGGAAAAAATAGTGATGGAGCATTATTTTGAATTCAGCCATGGGAGCGTCCCCTGCTCGTCGTGGATGTCCGAGTTGAAGAATGGGTGGTTACCATGCACAGATTTTTGGACGATTCGGTATTTCATCATCATACGACGGAATAATCAAAGGAGATGTACTGTAGCCATATAATCTCGAGTCATCGTCATCGTCGTCTTTGTGTTAGGAAGAAACACGCGTAAATTTTTTGTATGTGATATCTTTGTTAGCAATTTCCCTGCTTTGTTATAATTCCATATTCCCCCCCCCCCCTTCGAGCTGATTGTTTAGTGAGAGAATATAAGTGGTGTGATGAGTAACCACCAAGATTTGTTGGATTTTGTTGTATTTTCAATTTTCCTTGGTCAGATGTTAAATTTTGTTGAGAAAGAGTTGCATTAATACTTACTTCATTTGTGTTGTTC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G07100.1	1	AtSEC24A;ERMO2;SEC24A\|ENDOPLASMIC RETICULUM MORPHOLOGY 2
Pyrus communis	PCP021166.1	1	-
Pyrus x bretschneideri	Pbr026051.1	1	-
Rosa multiflora	Rmu_sc0019452.1_g000001.1	1	-
Vitis vinifera	GSVIVT01014261001	1	Sec23/Sec24 protein transport family protein
Populus trichocarpa	Potri.008G049700.6	1	Sec23/Sec24 protein transport family protein
Populus trichocarpa	Potri.010G211100.2	0.648	Sec23/Sec24 protein transport family protein
Nicotiana benthamiana	Niben101Scf06077g05012.1	1	Protein transport protein Sec24-like
Oryza sativa	LOC_Os04g04020.1	1	"protein transport protein Sec24-like, putative, expressed"
Zea mays	GRMZM2G081745_P01	1	-
Zea mays	GRMZM2G143725_P01	0.777	-

Gene Ontology

GO term	Description	Category
GO:0006888	ER to Golgi vesicle-mediated transport	biological_process
GO:0030127	COPII vesicle coat	cellular component
GO:0006886	intracellular protein transport	biological_process
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K14007	protein transport protein SEC24	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04810.11	zf-Sec23_Sec24	386	424	5.90E-17
PF04811.11	Sec23_trunk	461	697	2.80E-80
PF08033.8	Sec23_BS	703	787	7.80E-18
PF04815.11	Sec23_helical	801	902	1.20E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.08902
SRR5252888	dormant buds	no	dormant buds(0 month)	15.2373
SRR5252889	dormant buds	no	dormant buds(0 month)	18.8665
SRR5252886	dormant buds	no	dormant buds(1 months)	17.5014
SRR5252887	dormant buds	no	dormant buds(1 months)	22.8481
SRR5252884	dormant buds	no	dormant buds(2 months)	17.5127
SRR5252882	dormant buds	no	dormant buds(3 months)	16.6749
SRR5252883	dormant buds	no	dormant buds(3 months)	22.9671
SRR5252880	dormant buds	no	dormant buds(4 months)	17.9287
SRR5252881	dormant buds	no	dormant buds(4 months)	16.8707
SRR5252878	bud break	no	bud break	23.2943
SRR5252879	bud break	no	bud break	16.9101
SRR3744766	flower	no	mature	10.1253
SRR3744767	flower	no	mature	10.2488
SRR3744768	flower	no	mature	9.74741
SRR6308190	stigmas	no	open flowers	8.95721
SRR6308181	styles	no	open flowers	8.97761
SRR6308188	filaments	no	open flowers	11.3237
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	15.8125
SRR6308192	pollen	no	open flowers	24.5558
SRR6308191	petals	no	open flowers	9.69876
SRR6308194	sepals	no	open flowers	8.90112
SRR6308193	receptacles	no	open flowers	8.80626
SRR6308189	ovaries	no	open flowers	9.93703
SRR3384922	fruit	no	1 week after full bloom	3.62126
SRR3384921	fruit	no	2 week after full bloom	3.67199
SRR3384920	fruit	no	3 week after full bloom	4.20521
SRR3384919	fruit	no	4 week after full bloom	4.67298
SRR3384923	fruit	no	5 week after full bloom	4.72281
SRR3384918	fruit	no	6 week after full bloom	5.64546
SRR3384917	fruit	no	8 week after full bloom	5.57377
SRR3384916	fruit	no	10 week after full bloom	7.42272
SRR3384915	fruit	no	12 week after full bloom	6.80212
SRR3384914	fruit	no	14 week after full bloom	9.18581
SRR3384913	fruit	no	16 week after full bloom	8.18828
SRR3384912	fruit	no	18 week after full bloom	10.5688
SRR3384911	fruit	no	19 week after full bloom	8.23329
SRR3384910	fruit	no	20 week after full bloom	12.0091
SRR768128	whole fruit	no	25 days post anthesis	8.94116
SRR768129	whole fruit	no	35 days post anthesis	6.2884
SRR768130	whole fruit	no	60 days post anthesis	10.3581
SRR768131	whole fruit	no	87 days post anthesis	20.9883
SRR7343308	immature fruit flesh	no	immature	14.7391
SRR7343309	immature fruit flesh	no	immature	14.0845
SRR6320494	ripe fruit flesh	no	mature	17.6207
SRR5405143	ripe fruit peel	no	mature	27.9428
SRR6320572	ripe fruit peel	no	mature	15.3946
SRR7403504	fruit	uninfected	mature	17.9335
SRR7403506	fruit	uninfected	mature	19.8614
SRR7403507	fruit	uninfected	mature	18.1657
SRR7403500	fruit	infected with penicillium expansum	mature	33.0346
SRR7403501	fruit	infected with penicillium expansum	mature	28.8185
SRR7403508	fruit	infected with penicillium expansum	mature	29.1299
SRR7403502	fruit	infected with penicillium expansum	mature	29.1296
SRR7403503	fruit	infected with penicillium expansum	mature	29.7988
SRR7403505	fruit	infected with penicillium expansum	mature	30.5872
SRR1613973	Central seeds	no	20DAPF	9.09611
SRR1613974	Central seeds	no	20DAPF	9.13384
SRR1613975	Central seeds	no	20DAPF	8.90912
SRR1613976	Lateral seeds	no	20DAPF	7.85017
SRR1613977	Lateral seeds	no	20DAPF	7.25533
SRR1613978	Lateral seeds	no	20DAPF	8.4433
SRR3744786	stem	no	mature	11.3896
SRR3744787	stem	no	mature	10.7838
SRR3744772	stem	no	mature	12.0794
SRX765691	seedling shoot apex	no	4-6 week old seedling	12.2655
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.36
SRR1089478	leaf	Virus-free	plantlets	11.1718
SRR1089477	leaf	ASGV-infected	plantlets	8.82174
SRR767660	leaf	uninfected	fully developed	5.50663
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.06218
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.63601
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.21452
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.59003
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.95166
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.87507
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.92768
SRR6308182	young leaf	no	immature leaves	10.0612
SRR3744769	leaf	no	mature	10.291
SRR3744770	leaf	no	mature	11.1868
SRR3744771	leaf	no	mature	10.2495
SRR5405145	leaf	no	mature	17.7665
SRR6320561	leaf	no	mature	4.96885