Gene detail

Detail information of MD12G1207400 Annotation

Gene ID	Annotation
MD12G1207400	thioredoxin family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1207400	mRNA	Chr12	28725240	28729008	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G315000.1.p	1	thioredoxin family protein
Pyrus communis	PCP025921.1	1	-
Pyrus x bretschneideri	Pbr016415.1	1	-
Rubus occidentalis	Ro06_G23813	1	-
Vitis vinifera	GSVIVT01031219001	1	thioredoxin family protein
Populus trichocarpa	Potri.014G122800.2	1	thioredoxin family protein
Nicotiana benthamiana	Niben101Scf00332g04004.1	1	Protein disulfide-isomerase
Oryza sativa	LOC_Os05g06430.2	1	"OsPDIL2-1 protein disulfide isomerase PDIL2-1, expressed"
Oryza sativa	LOC_Os01g23740.2	1	"OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed"
Zea mays	GRMZM2G159369_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005783	endoplasmic reticulum	cellular component
GO:0006662	glycerol ether metabolic process	biological_process
GO:0045454	cell redox homeostasis	biological_process
GO:0009055	electron carrier activity	molecular_function
GO:0016853	isomerase activity	molecular_function
GO:0015035	protein disulfide oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K09584	protein disulfide-isomerase A6	EC:5.3.4.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.16	Thioredoxin	26	129	2.00E-32
PF00085.16	Thioredoxin	144	248	1.40E-32
PF07749.8	ERp29	265	358	5.10E-24

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	96.379
SRR5252888	dormant buds	no	dormant buds(0 month)	70.523
SRR5252889	dormant buds	no	dormant buds(0 month)	73.4343
SRR5252886	dormant buds	no	dormant buds(1 months)	87.416
SRR5252887	dormant buds	no	dormant buds(1 months)	80.9706
SRR5252884	dormant buds	no	dormant buds(2 months)	63.4638
SRR5252882	dormant buds	no	dormant buds(3 months)	55.9388
SRR5252883	dormant buds	no	dormant buds(3 months)	32.6079
SRR5252880	dormant buds	no	dormant buds(4 months)	55.6105
SRR5252881	dormant buds	no	dormant buds(4 months)	57.3336
SRR5252878	bud break	no	bud break	62.6238
SRR5252879	bud break	no	bud break	92.2515
SRR3744766	flower	no	mature	76.3744
SRR3744767	flower	no	mature	68.8726
SRR3744768	flower	no	mature	75.6348
SRR6308190	stigmas	no	open flowers	183.368
SRR6308181	styles	no	open flowers	124.682
SRR6308188	filaments	no	open flowers	118.803
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	140.738
SRR6308192	pollen	no	open flowers	381.298
SRR6308191	petals	no	open flowers	109.353
SRR6308194	sepals	no	open flowers	105.703
SRR6308193	receptacles	no	open flowers	85.7718
SRR6308189	ovaries	no	open flowers	111.59
SRR3384922	fruit	no	1 week after full bloom	131.227
SRR3384921	fruit	no	2 week after full bloom	127.571
SRR3384920	fruit	no	3 week after full bloom	84.6095
SRR3384919	fruit	no	4 week after full bloom	102.924
SRR3384923	fruit	no	5 week after full bloom	88.5985
SRR3384918	fruit	no	6 week after full bloom	95.7847
SRR3384917	fruit	no	8 week after full bloom	73.8998
SRR3384916	fruit	no	10 week after full bloom	75.1571
SRR3384915	fruit	no	12 week after full bloom	83.1405
SRR3384914	fruit	no	14 week after full bloom	81.6544
SRR3384913	fruit	no	16 week after full bloom	92.9314
SRR3384912	fruit	no	18 week after full bloom	77.1766
SRR3384911	fruit	no	19 week after full bloom	98.461
SRR3384910	fruit	no	20 week after full bloom	90.5971
SRR768128	whole fruit	no	25 days post anthesis	111.332
SRR768129	whole fruit	no	35 days post anthesis	145.515
SRR768130	whole fruit	no	60 days post anthesis	71.4442
SRR768131	whole fruit	no	87 days post anthesis	69.1293
SRR7343308	immature fruit flesh	no	immature	58.2685
SRR7343309	immature fruit flesh	no	immature	73.1274
SRR6320494	ripe fruit flesh	no	mature	62.0841
SRR5405143	ripe fruit peel	no	mature	54.1437
SRR6320572	ripe fruit peel	no	mature	40.3952
SRR7403504	fruit	uninfected	mature	59.4596
SRR7403506	fruit	uninfected	mature	52.4315
SRR7403507	fruit	uninfected	mature	57.3313
SRR7403500	fruit	infected with penicillium expansum	mature	147.328
SRR7403501	fruit	infected with penicillium expansum	mature	162.43
SRR7403508	fruit	infected with penicillium expansum	mature	148.945
SRR7403502	fruit	infected with penicillium expansum	mature	116.182
SRR7403503	fruit	infected with penicillium expansum	mature	118.373
SRR7403505	fruit	infected with penicillium expansum	mature	113.129
SRR1613973	Central seeds	no	20DAPF	118.321
SRR1613974	Central seeds	no	20DAPF	108.097
SRR1613975	Central seeds	no	20DAPF	105.847
SRR1613976	Lateral seeds	no	20DAPF	118.403
SRR1613977	Lateral seeds	no	20DAPF	107.784
SRR1613978	Lateral seeds	no	20DAPF	108.11
SRR3744786	stem	no	mature	47.6188
SRR3744787	stem	no	mature	48.8659
SRR3744772	stem	no	mature	49.0377
SRX765691	seedling shoot apex	no	4-6 week old seedling	56.5184
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	79.799
SRR1089478	leaf	Virus-free	plantlets	32.7486
SRR1089477	leaf	ASGV-infected	plantlets	35.4122
SRR767660	leaf	uninfected	fully developed	42.5407
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	69.6679
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	42.1805
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	58.9251
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	40.9866
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	67.1028
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	78.6227
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	68.5273
SRR6308182	young leaf	no	immature leaves	101.778
SRR3744769	leaf	no	mature	45.52
SRR3744770	leaf	no	mature	43.9795
SRR3744771	leaf	no	mature	45.832
SRR5405145	leaf	no	mature	34.1063
SRR6320561	leaf	no	mature	69.1902