Gene detail

Detail information of MD12G1218200 Annotation

Gene ID	Annotation
MD12G1218200	lipoxygenase 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1218200	mRNA	Chr12	29571960	29576045	-

Sequences

CDS:

MD12G1218200

TGATCCCATGAAAGTATTCCCAGCTGGTTTCTTGTGCGTGACTGATGTGGCACGATCTCAGCCTTTGACTGTGGTTTCATCAACTGCAAAGCCATCCCAGACCATCAACGTTGATCATCGCCCGAAAACTGGGGAGAAGAAACTCAGAGGTACAGTGGTGTTGATGAAGAAGAACGTTTTGGAGCTCAACGACCTCAAAGCTTCAGTTCATGATCGTTTCGATGAGCTGCGGGGTAAAAGAGTTTTACTGCAGCTCATCAGTTCTGTTAATTGTGACCCTGAAAATGGGTGGCAAGGAAAAGTTGGAAAGCCGGCATATTTGGAAGATTGGATTACCAAAATCACTCCTTTAACAGCAGAGGAGACTGCATTTGATGTTACTTTCGATTGGGACGAGGAGATTGGAGTCCCGGGAGCATTCATAATCCGAAATGAGCATCACAATGAGTTCTACTTGAAGTCTCTCACACTCGAAGATGTTCCTGGTGAAGGTCGAGTCCACTTTGTTTGCAACTCATGGGTGTACCCTACTGAAAAGTACAAAAAAGACCGCGTTTTCTTCGCTAACAAGACGTATATTTCAAGTGATACGCCGGTGCCATTACAGAAATTCAGAGAAGAAGAGCTCAAGAACTTGAGAGGAGACGACGACGATGAAAAAAGAGAGCTTCAGGAGTGGGACAGAGTTTATGGCTATGCTTACTACGATGATTTGGGAAAACCATATAAGGGTCTAGAATATGAGCGTCCAACTCTCGGAGGGTCTAGTGATTTTCCTTATCCTCGCAGAGTAAAAATCGGAAGACAAGCAACTGAAAAAGCGAGCCCCATGATGCTTCCCGTGAACATATTTGTGTACGTTCCAAGAGACGAAAAATTTGGCCACTTAAAGACGTCAGACGCAATTGCTTATGCCCTGAAATCGATATCTCAGATCGTTAAGCCTGATGAGCTAGCAACTCTAGTTGCCTCACAAAACGAGTTCGGAAGCTTGAATGATGTACTTAAACTCTACGAAGGAGGAATACGGTTGCCCGAGGGTTTACTGAAATCCGTTAGGGATAACATCCCTTTAGAGACAATCAAGGAACTTTTTCGACTTGATGGTGAAAATTTCCTGAAGTTCCCTGTGCCTCAAGTGATCAGAGAGGATAAATCAGCATGGAGAACTGATGAAGAATTTGCAAGAGAAATGCTGGCAGGAATAAATCCTGTTGCAATTCGTCTTCTCAAAGAGTTTCCGCCTGCTAGCAAGCTAGATCGAAAAGCATATGGGGATCAGACTAGTCTAATAACCAAAGAAAACATAGCTCATAACTTAAAAGGACTCAGCATAGACGAGGCAATCGATAACAATAAGTTATTCATATTAGACCACCATGATTCAATAATGCCGTACCTGAGGCGCATAAACACAACTTCAACGAAAACATATGCAAGCAGGACACTCCTCTTCTTACAAGATGACGGGACTTTGAAGCCATTAGCTATTGAATTAAGCTTGCCGCATCCCAACGGGGATCAATTTGGTTGCACCGGCAAAGTCTATACCCCCTCTAGCCAAGGTGTTGAGAGTTCCATTTGGCAACTTGCTAAAGCTTACGTGGCTGTGAATGACACTGGTTACCATCAGCTCATCAGTCACTGGTTGAGAACTCATGCAGTGATGGAGCCATTTATTATAGCAACAAATAGGCAGTTGAGCGTGCTTCATCCGGTTCATAAACTCCTGCATCCTCACTTTCGTGACAATATGAATGTAAATGCACTCGCTAGACAGGTTCTCATTAACGCTTCTGGAATACTAGAGACGACAGTCTTTCCTGCAAAGTTTTCAATGGAATGGTCGTCTGCAATGTATAAGAATTGGGTTTTTCCTGAACAAGCGCTCCCCGTAGATCTGACCAAAAGAGGAATGGCAGTTGAAGATTCAAGCTCCTCGCACGGCGTGCGCTTGCTGATAGAGGACTATCCATATGCTGCAGACGGGCTTGAGATATGGTTTGCAATTAAAACATGGGTTAAAGACTACTGCTCCTTCTACTATAAAACCGACGAGACTGTCCAAAAGGACTCGGAACTCCAGTCCTGGTGGAAGGAACTCCGCGAGGAAGGTCACGGTGACAAGAAAGATGAGCCCTGGTGGCCAAAAATGCAAACTCGTGAAGAGCTGATAGAATCGTGCACCATTATCATATGGATTGCTTCAGCCTATCATGCAGCAATCAATTTTGGGCAGTACCCTTATGGTGGATACCTCCCAAACCGACCAAGCACAAGCAGGCGATTCATGCCTGAAGAAGGCACTCCTGAATACGAGGAGCTCAAGACAAACCCCGAGAAGGCATTTTTGAAAACATTCACACCGGAGCTGCAGACCCTTCTTGGCATGGCCACAATCGAAATCTTATCAAGGCATACGGTTGATGAGGTTTATTTGGGGCATAGAGACACCGCAGAATGGACAACGGACGCAGACATATTGCAAGCTTCTAAGAATTTCAGAAACAAGCTGAAAGAAATTGAGGAATGCATAAAGAGAAAGAACAAGGATAAGAGATTGAAGAACCGTACTGGACCGGCCAAGATGCCATATACACTGCTCTATCCTTCGAGTGATCCCGGACTTACTGGCAAGGGAATTCCCAACAGTGTCTCAATCTAATGCTTCTCTACTTCGTATCTTATTCTTGGCTTGCTATATATAAGTATATAATTTTTTTTGTCAGAATAAAACCAAAATTATTCATGTAATTTCTCTGCAAATAATGATCAACTACTTCCCTGGTACTACT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP030767.1	1	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0016165	linoleate 13S-lipoxygenase activity	molecular_function
GO:0005506	iron ion binding	molecular_function

KEGG

KO	Description	Enzyme
K15718	linoleate 9S-lipoxygenase	EC:1.13.11.58

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.19	PLAT	87	185	1.20E-19
PF00305.15	Lipoxygenase	199	868	0

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.11668
SRR5252888	dormant buds	no	dormant buds(0 month)	8.31878
SRR5252889	dormant buds	no	dormant buds(0 month)	10.7297
SRR5252886	dormant buds	no	dormant buds(1 months)	13.0004
SRR5252887	dormant buds	no	dormant buds(1 months)	8.87675
SRR5252884	dormant buds	no	dormant buds(2 months)	4.00631
SRR5252882	dormant buds	no	dormant buds(3 months)	7.72714
SRR5252883	dormant buds	no	dormant buds(3 months)	7.71275
SRR5252880	dormant buds	no	dormant buds(4 months)	6.1077
SRR5252881	dormant buds	no	dormant buds(4 months)	7.29287
SRR5252878	bud break	no	bud break	9.34024
SRR5252879	bud break	no	bud break	15.6041
SRR3744766	flower	no	mature	0.884159
SRR3744767	flower	no	mature	0.984851
SRR3744768	flower	no	mature	0.940432
SRR6308190	stigmas	no	open flowers	0.84106
SRR6308181	styles	no	open flowers	1.78938
SRR6308188	filaments	no	open flowers	2.55355
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.59401
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.77061
SRR6308194	sepals	no	open flowers	8.73732
SRR6308193	receptacles	no	open flowers	4.98382
SRR6308189	ovaries	no	open flowers	2.47259
SRR3384922	fruit	no	1 week after full bloom	10.0978
SRR3384921	fruit	no	2 week after full bloom	8.61263
SRR3384920	fruit	no	3 week after full bloom	16.5735
SRR3384919	fruit	no	4 week after full bloom	22.1647
SRR3384923	fruit	no	5 week after full bloom	24.3493
SRR3384918	fruit	no	6 week after full bloom	20.4709
SRR3384917	fruit	no	8 week after full bloom	11.9932
SRR3384916	fruit	no	10 week after full bloom	9.33295
SRR3384915	fruit	no	12 week after full bloom	6.46399
SRR3384914	fruit	no	14 week after full bloom	11.1451
SRR3384913	fruit	no	16 week after full bloom	13.7424
SRR3384912	fruit	no	18 week after full bloom	5.67834
SRR3384911	fruit	no	19 week after full bloom	5.66159
SRR3384910	fruit	no	20 week after full bloom	2.62599
SRR768128	whole fruit	no	25 days post anthesis	12.5616
SRR768129	whole fruit	no	35 days post anthesis	22.3011
SRR768130	whole fruit	no	60 days post anthesis	15.547
SRR768131	whole fruit	no	87 days post anthesis	19.1976
SRR7343308	immature fruit flesh	no	immature	19.4714
SRR7343309	immature fruit flesh	no	immature	17.7159
SRR6320494	ripe fruit flesh	no	mature	0.32836
SRR5405143	ripe fruit peel	no	mature	1.23619
SRR6320572	ripe fruit peel	no	mature	1.00215
SRR7403504	fruit	uninfected	mature	0.579158
SRR7403506	fruit	uninfected	mature	0.645785
SRR7403507	fruit	uninfected	mature	0.827294
SRR7403500	fruit	infected with penicillium expansum	mature	0.291057
SRR7403501	fruit	infected with penicillium expansum	mature	0.123406
SRR7403508	fruit	infected with penicillium expansum	mature	0.311369
SRR7403502	fruit	infected with penicillium expansum	mature	0.550248
SRR7403503	fruit	infected with penicillium expansum	mature	0.384114
SRR7403505	fruit	infected with penicillium expansum	mature	0.552436
SRR1613973	Central seeds	no	20DAPF	79.8511
SRR1613974	Central seeds	no	20DAPF	75.2333
SRR1613975	Central seeds	no	20DAPF	55.1108
SRR1613976	Lateral seeds	no	20DAPF	68.3521
SRR1613977	Lateral seeds	no	20DAPF	60.3719
SRR1613978	Lateral seeds	no	20DAPF	69.9487
SRR3744786	stem	no	mature	0.369106
SRR3744787	stem	no	mature	0.182491
SRR3744772	stem	no	mature	0.234022
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.5655
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.77546
SRR1089478	leaf	Virus-free	plantlets	1.61832
SRR1089477	leaf	ASGV-infected	plantlets	2.2942
SRR767660	leaf	uninfected	fully developed	1.86887
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.717524
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.75541
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.731468
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.35786
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.0412
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.17665
SRR6308182	young leaf	no	immature leaves	13.1636
SRR3744769	leaf	no	mature	0.67472
SRR3744770	leaf	no	mature	0.438771
SRR3744771	leaf	no	mature	0.584659
SRR5405145	leaf	no	mature	15.0707
SRR6320561	leaf	no	mature	9.16653