| Gene ID | Annotation |
|---|---|
| MD12G1233200 | NOP56-like pre RNA processing ribonucleoprotein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0653 | RNA methylation nucleolus pyrimidine ribonucleotide biosynthetic process purine nucleotide biosynthetic process U2 small nuclear ribonucleoprotein A' H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] flap endonuclease-1 [EC:3.-.-.-] 5'-3' exonuclease activity Cajal body plasmodesma pseudouridine synthase activity pseudouridine synthesis cell wall DNA binding cytosol |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD12G1233200 | mRNA | Chr12 | 30904216 | 30908080 | - |
| CDS: |
| MD12G1233200 |
| Protein: |
| MD12G1233200 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G05060.1 | 1 | NOP56-like pre RNA processing ribonucleoprotein |
| Prunus persica | Prupe.6G336300.1.p | 1 | NOP56-like pre RNA processing ribonucleoprotein |
| Rosa multiflora | Rmu_sc0022184.1_g000001.1 | 1 | - |
| Rubus occidentalis | Ro06_G08181 | 1 | - |
| Fragaria vesca | mrna16437.1 | 1 | NOP56-like pre RNA processing ribonucleoprotein |
| Vitis vinifera | GSVIVT01021905001 | 1 | NOP56-like pre RNA processing ribonucleoprotein |
| Solanum lycopersicum | Solyc09g083080.2.1 | 1 | NOP56-like pre RNA processing ribonucleoprotein |
| Populus trichocarpa | Potri.005G045600.6 | 1 | NOP56-like pre RNA processing ribonucleoprotein |
| Populus trichocarpa | Potri.013G032300.2 | 0.671 | NOP56-like pre RNA processing ribonucleoprotein |
| Nicotiana benthamiana | Niben101Scf06664g00003.1 | 1 | Nucleolar protein 58 |
| Nicotiana benthamiana | Niben101Scf33515g00005.1 | 0.797 | Nucleolar protein 58 |
| Oryza sativa | LOC_Os03g22730.1 | 1 | "nucleolar protein NOP5-1, putative" |
| Oryza sativa | LOC_Os03g22740.1 | 0.912 | "nucleolar protein NOP5-1, putative" |
| Zea mays | GRMZM2G125148_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08156.9 | NOP5NT | 2 | 65 | 3.60E-21 |
 |