| Gene ID | Annotation |
|---|---|
| MD12G1256000 | VPS54 |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0700 | Golgi apparatus retrograde transport TATA element modulatory factor clathrin-coated endocytic vesicle |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD12G1256000 | mRNA | Chr12 | 32369850 | 32377739 | - |
| CDS: |
| MD12G1256000 |
| Protein: |
| MD12G1256000 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G19490.2 | 1 | ATVPS54;VPS54|ARABIDOPSIS THALIANA VPS54 HOMOLOG; |
| Arabidopsis thaliana | AT4G19490.1 | 1 | ATVPS54;VPS54|ARABIDOPSIS THALIANA VPS54 HOMOLOG; |
| Pyrus communis | PCP008529.1 | 1 | - |
| Pyrus x bretschneideri | Pbr023615.1 | 1 | - |
| Rosa multiflora | Rmu_sc0011979.1_g000005.1 | 1 | - |
| Rosa multiflora | Rmu_sc0003308.1_g000012.1 | 0.977 | - |
| Fragaria vesca | mrna16757.1 | 1 | VPS54 |
| Vitis vinifera | GSVIVT01037972001 | 1 | VPS54 |
| Solanum lycopersicum | Solyc02g030110.2.1 | 1 | VPS54 |
| Populus trichocarpa | Potri.011G154000.3 | 1 | VPS54 |
| Nicotiana benthamiana | Niben101Scf03282g01001.1 | 1 | Vacuolar protein sorting-associated protein 54 |
| Oryza sativa | LOC_Os04g13470.1 | 1 | expressed protein |
| Zea mays | GRMZM2G137984_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
| KO | Description | Enzyme |
|---|---|---|
| K17600 | vacuolar protein sorting-associated protein 54 | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 |