Gene detail

Detail information of MD12G1258800 Annotation

Gene ID	Annotation
MD12G1258800	CAX interacting protein 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD12G1258800	mRNA	Chr12	32540736	32542952	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G54900.1	1	ATGRXCP;CXIP1\|GLUTAREDOXIN;CAX interacting protein 1
Prunus persica	Prupe.6G359300.2.p	1	CAX interacting protein 1
Prunus persica	Prupe.6G359300.1.p	1	CAX interacting protein 1
Rosa multiflora	Rmu_sc0013667.1_g000004.1	1	-
Fragaria vesca	mrna16785.1	1	CAX interacting protein 1
Vitis vinifera	GSVIVT01032936001	1	CAX interacting protein 1
Populus trichocarpa	Potri.014G141200.4	1	CAX interacting protein 1
Nicotiana benthamiana	Niben101Scf13167g01012.1	1	Glutaredoxin-3
Oryza sativa	LOC_Os03g63420.1	1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"
Zea mays	GRMZM2G022248_P01	1	-
Zea mays	GRMZM2G013695_P01	0.629	Grx_S14-glutaredoxin subgroup II

Gene Ontology

GO term	Description	Category
GO:0045454	cell redox homeostasis	biological_process
GO:0009055	electron carrier activity	molecular_function
GO:0015035	protein disulfide oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K07390	monothiol glutaredoxin	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00462.20	Glutaredoxin	93	156	2.50E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	62.7685
SRR5252888	dormant buds	no	dormant buds(0 month)	12.5051
SRR5252889	dormant buds	no	dormant buds(0 month)	12.7305
SRR5252886	dormant buds	no	dormant buds(1 months)	9.14601
SRR5252887	dormant buds	no	dormant buds(1 months)	13.0458
SRR5252884	dormant buds	no	dormant buds(2 months)	11.8469
SRR5252882	dormant buds	no	dormant buds(3 months)	12.7012
SRR5252883	dormant buds	no	dormant buds(3 months)	12.3892
SRR5252880	dormant buds	no	dormant buds(4 months)	14.9249
SRR5252881	dormant buds	no	dormant buds(4 months)	14.9775
SRR5252878	bud break	no	bud break	12.2183
SRR5252879	bud break	no	bud break	11.6294
SRR3744766	flower	no	mature	34.5377
SRR3744767	flower	no	mature	33.0176
SRR3744768	flower	no	mature	38.1575
SRR6308190	stigmas	no	open flowers	37.0334
SRR6308181	styles	no	open flowers	32.046
SRR6308188	filaments	no	open flowers	26.9673
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	37.2969
SRR6308192	pollen	no	open flowers	108.517
SRR6308191	petals	no	open flowers	19.6202
SRR6308194	sepals	no	open flowers	30.3303
SRR6308193	receptacles	no	open flowers	29.6483
SRR6308189	ovaries	no	open flowers	30.0618
SRR3384922	fruit	no	1 week after full bloom	32.8967
SRR3384921	fruit	no	2 week after full bloom	27.7187
SRR3384920	fruit	no	3 week after full bloom	34.1877
SRR3384919	fruit	no	4 week after full bloom	29.7265
SRR3384923	fruit	no	5 week after full bloom	36.863
SRR3384918	fruit	no	6 week after full bloom	33.1686
SRR3384917	fruit	no	8 week after full bloom	30.5909
SRR3384916	fruit	no	10 week after full bloom	35.2965
SRR3384915	fruit	no	12 week after full bloom	28.2715
SRR3384914	fruit	no	14 week after full bloom	40.9847
SRR3384913	fruit	no	16 week after full bloom	38.0746
SRR3384912	fruit	no	18 week after full bloom	43.2813
SRR3384911	fruit	no	19 week after full bloom	48.9575
SRR3384910	fruit	no	20 week after full bloom	40.5684
SRR768128	whole fruit	no	25 days post anthesis	21.7401
SRR768129	whole fruit	no	35 days post anthesis	21.2212
SRR768130	whole fruit	no	60 days post anthesis	23.296
SRR768131	whole fruit	no	87 days post anthesis	15.4627
SRR7343308	immature fruit flesh	no	immature	20.9936
SRR7343309	immature fruit flesh	no	immature	20.4034
SRR6320494	ripe fruit flesh	no	mature	47.3481
SRR5405143	ripe fruit peel	no	mature	40.7389
SRR6320572	ripe fruit peel	no	mature	61.4425
SRR7403504	fruit	uninfected	mature	44.3522
SRR7403506	fruit	uninfected	mature	46.9638
SRR7403507	fruit	uninfected	mature	47.1675
SRR7403500	fruit	infected with penicillium expansum	mature	13.3163
SRR7403501	fruit	infected with penicillium expansum	mature	15.0755
SRR7403508	fruit	infected with penicillium expansum	mature	13.0708
SRR7403502	fruit	infected with penicillium expansum	mature	13.0578
SRR7403503	fruit	infected with penicillium expansum	mature	15.7259
SRR7403505	fruit	infected with penicillium expansum	mature	16.1877
SRR1613973	Central seeds	no	20DAPF	40.8821
SRR1613974	Central seeds	no	20DAPF	35.1625
SRR1613975	Central seeds	no	20DAPF	36.6199
SRR1613976	Lateral seeds	no	20DAPF	35.2955
SRR1613977	Lateral seeds	no	20DAPF	37.5874
SRR1613978	Lateral seeds	no	20DAPF	33.321
SRR3744786	stem	no	mature	29.9767
SRR3744787	stem	no	mature	29.6414
SRR3744772	stem	no	mature	25.8395
SRX765691	seedling shoot apex	no	4-6 week old seedling	14.1496
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	21.2979
SRR1089478	leaf	Virus-free	plantlets	14.8418
SRR1089477	leaf	ASGV-infected	plantlets	15.9187
SRR767660	leaf	uninfected	fully developed	52.3658
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	58.4514
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	34.5245
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	35.9928
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	34.1599
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	50.7863
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	41.683
SRR6308182	young leaf	no	immature leaves	23.0523
SRR3744769	leaf	no	mature	38.1329
SRR3744770	leaf	no	mature	34.1536
SRR3744771	leaf	no	mature	38.121
SRR5405145	leaf	no	mature	62.2065
SRR6320561	leaf	no	mature	48.4972