Gene detail

Detail information of MD13G1019800 Annotation

Gene ID	Annotation
MD13G1019800	response regulator 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0687	mitochondrial import inner membrane translocase subunit TIM17 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] ARR-B purine ribonucleoside salvage hypoxanthine metabolic process guanine salvage GMP salvage IMP salvage hypoxanthine phosphoribosyltransferase activity adenine salvage regulation of seed growth

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1019800	mRNA	Chr13	1246553	1250362	-

Sequences

CDS:

MD13G1019800

AATAGGTCCAATTCTCTCTCAATTTCTCCGATTTCGTTCTGTCTGATTGCTTTCCGAAACCCTAATCCCCAAACCGAAGGTTTCCCCTCGCGGATCTCCCTCCAATTGGCTCCACTTTCACCCTCTGCAAGTGCAACCACTAAAAATGGAAATTTTAGTCCATTGAAAATGGAACATTAGGGTTCGGTCGTCAGTGGGTGTGTGTGTTTTGCGTCGTTGTGGTGACGGTGTGTGGTGGCCATGGCTGCTTTGCAGAGAGTGGCGCAGTCAAGCGTGAGCACTACTGCGAGTAGTTACGGTTCGTGTAAAGTTGGTGGTGGTGTTTTGTCACCGTCTGCCGGCATTGAAATGGCAGTCCCCAATCAGTTTCCGGCGGGCTTGAGGGTTCTAGTGGTGGACGATGACACCACGTGCTTGAGGATTCTTGAGCTGATGTTACTCCGGTGTCTGTACCAGGTTACCACTTGTTCCGAGGCTACTGTTGCTTTGAATCTTCTACGAGAGAGGAAAGACTGTTTTGATGTCGTACTGAGTGATGTCCATATGCCTGATATGGATGGATTTAAACTCCTGGAACACGTTGGGCTGGAAATGGACCTTCCTGTTATCATGATGTCTGCTGATGGGAGAACAAGTGTTGTTATGAGAGGAATTAGACATGGAGCCTGTGATTTTTTAATTAAGCCTATAAGTGAGGCAGAACTCAAGAATATTTGGCAGCATGTTGTTAGGAAAAAATGGAATGGAAGTAAAGAACTTGAACATTCTGGGAGCTTGGAAGATAATGATCCACATAAACGGGGAAACAATGATTTTGAATACGCATCTTCTGTTAACGAAGGAACAGAAGTTTCATTGAAAGGTCATAAGAAGAGGATCAACCCTAAAGAAGATGATGATGGTGATACAGAAAACGATGATTTGTCTACATCGAAGAAACCTCGTGTAGTATGGTCAGTTGAACTCCACCAGCAATTTGTCACTGCTGTGAACCAGCTTGGCCTTGATAAGGCTGTACCAAAGAGAATTCTTGAATTGATGAATGTACCTGGTTTAACTCGAGAAAATGTTGCTAGCCATTTGCAGAAATTCAGGTTATATTTGAAGAGATTAAGTGGAGTAGCTCAACAACAAAGTGGGATTGCAAATCCTTTATGTGGGCCCGTGGACTCAAATGGGAAGTTGGGTTCGCTTAGTAGATTTGACTTCCAAGCTTTGGCTGCCTCTGGACAAATTCCTCCGCAAACACTAGCAGCCCTGCAAGCTGAGCTTTTAGGTCAACCTGCAGGGAACCTTGTGCCAGCAATGGATCAGCCTGCACTTCTACATGCATCCCTACAAGCACCCAAGCGTCCCCCTGTTGAACATGGTGTGCCATTCATGCAGCCTTTCGTAAAAAGCCAATCAAACGTTTCCAAACATTTTCCACAATCCGTTATTTCTGCTGAGGATGCATCTCTGGGATTTGGACAATGGAGGTCTAATAGTCGTAGTACAGTGGCACCCAGCAATGATCATGGAGGGTTGAGTACTCAGAACAGTAACTTGTTGATGGGAATTGTGCCGCAGGAGCAAAGACAACATAAAAGAACGCAGCAGCAGTCTGTGCTAACCGAACCTAGCCGTTCATTTAATGTGCAGCCATCTTGCCTTGTGGTCCCCTCTCAATCATCAACTGGTTTCCAGGCTGGAAATAGTCCTGCTTCTGTTAATCAGAGTAGTAGCTTTAACAGGTCTACTGTTGTTGATTACAGTCTGCCTTCAGATCAATCTAATAATTCCTTGAATGTTGGACATATACCGACTGGAAATCCTAAAACTAGTGGCATTCTTGGTGGGTATTCTGGCCCTGGTTCTATTTGTGCCACGTCTTGCTTAGTTAATGCTGACAATAGCACCAGTTACCAGAACTCAACTGCGACATTTAGTGATTCCAGAGAGTTGCCGGGGTTTTTGCATAATACGGCAAACAGCCATGGTTTTTATGTTGATAAGTCAGGGGAAATGCTTGATCAGGGACCTCTTAGGAATCTCGGATTTGTTGGTAAAGAGACTTGCATTCCAAGTCGATTTGCAGTGGATGATTTTGAATCGCAAATGAGCAACTTGAACCCTGGAAGGATCCATGTGGAGAGCAGTGGTACCCTAGTCAAGCAGGAGCCAAGTGAGGATTATGTGGATAACGCAAAACTAGGTATCCCAATATTACACCAATATTCTTCAAGTGATTTCATGAGTCCTTTCGCTGATTAGGTAACTATTGTCTTGGTATTATTCTAATTTTATTATGCTCTATATCACCAACATGTGCATAAGGGTGCGTGCGTCTGTGTCTTAGCTATTAGTGGTTCTTTGCTCGTCGATACTAGTATCTGAGAACCACAAGCTTGTAGATATCGATATGTAATTCTCATTTTTATTTGCAGCAGGCTTTCATTTTCAAGTCTCTTGATTTCCATGACGCGTACAGATTATTTCACATTATCAAAATGTTCAGTAGAGATTGCAGTTGAAGTATGTGTATTATATTCCTATGATTAGATCTAATAGATGTGCCTGCACCGGACTCAGATGCAGAGCGGCCTCTTGCATCCGAGACTTGAAAAATTGAGGACAAATGTGTTTTGGGGGCCCGCCCCGGGAGGGGGGGG

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ARR-B

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G334200.1.p	1	response regulator 2
Pyrus communis	PCP043117.1	1	-
Rosa multiflora	Rmu_ssc0000204.1_g000021.1	1	-
Rubus occidentalis	Ro04_G00252	1	-
Vitis vinifera	GSVIVT01011650001	1	response regulator 2
Solanum lycopersicum	Solyc04g008050.2.1	1	response regulator 2
Solanum lycopersicum	Solyc05g054390.2.1	1	response regulator 1
Solanum lycopersicum	Solyc12g010330.1.1	1	response regulator 12
Populus trichocarpa	Potri.010G105600.1	1	response regulator 2
Populus trichocarpa	Potri.008G135500.1	0.622	response regulator 2
Nicotiana benthamiana	Niben101Scf08368g01011.1	1	response regulator 2 LENGTH=664
Nicotiana benthamiana	Niben101Scf04568g01008.1	0.868	response regulator 1 LENGTH=690
Oryza sativa	LOC_Os03g12350.2	1	"two-component response regulator, putative, expressed"
Oryza sativa	LOC_Os01g21780.1	1	hypothetical protein
Zea mays	GRMZM2G099797_P01	1	Response regulator 8; Two-component response regulator ARR1
Zea mays	GRMZM2G126834_P01	0.864	ARR-B family member; ARR-B transcription factor; Putative two-component response regulator family protein isoform 1; Putative two-component response regulator family protein isoform 2;

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0000160	phosphorelay signal transduction system	biological_process
GO:0000156	phosphorelay response regulator activity	molecular_function
GO:0003682	chromatin binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.20	Response_reg	49	157	1.40E-21
PF00249.27	Myb_DNA-binding	235	284	6.00E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.468
SRR5252888	dormant buds	no	dormant buds(0 month)	14.7142
SRR5252889	dormant buds	no	dormant buds(0 month)	15.8181
SRR5252886	dormant buds	no	dormant buds(1 months)	13.1533
SRR5252887	dormant buds	no	dormant buds(1 months)	13.2845
SRR5252884	dormant buds	no	dormant buds(2 months)	11.75
SRR5252882	dormant buds	no	dormant buds(3 months)	9.16582
SRR5252883	dormant buds	no	dormant buds(3 months)	9.1673
SRR5252880	dormant buds	no	dormant buds(4 months)	13.46
SRR5252881	dormant buds	no	dormant buds(4 months)	11.5314
SRR5252878	bud break	no	bud break	19.459
SRR5252879	bud break	no	bud break	16.418
SRR3744766	flower	no	mature	9.7506
SRR3744767	flower	no	mature	9.72722
SRR3744768	flower	no	mature	10.1971
SRR6308190	stigmas	no	open flowers	9.79272
SRR6308181	styles	no	open flowers	10.2808
SRR6308188	filaments	no	open flowers	8.785
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.68026
SRR6308192	pollen	no	open flowers	3.5666
SRR6308191	petals	no	open flowers	6.7094
SRR6308194	sepals	no	open flowers	7.00603
SRR6308193	receptacles	no	open flowers	11.7124
SRR6308189	ovaries	no	open flowers	11.631
SRR3384922	fruit	no	1 week after full bloom	4.13687
SRR3384921	fruit	no	2 week after full bloom	4.71009
SRR3384920	fruit	no	3 week after full bloom	7.97336
SRR3384919	fruit	no	4 week after full bloom	8.52645
SRR3384923	fruit	no	5 week after full bloom	6.69728
SRR3384918	fruit	no	6 week after full bloom	7.19837
SRR3384917	fruit	no	8 week after full bloom	7.09336
SRR3384916	fruit	no	10 week after full bloom	6.67006
SRR3384915	fruit	no	12 week after full bloom	5.89519
SRR3384914	fruit	no	14 week after full bloom	6.20931
SRR3384913	fruit	no	16 week after full bloom	3.91021
SRR3384912	fruit	no	18 week after full bloom	5.57224
SRR3384911	fruit	no	19 week after full bloom	3.78021
SRR3384910	fruit	no	20 week after full bloom	5.99615
SRR768128	whole fruit	no	25 days post anthesis	12.9696
SRR768129	whole fruit	no	35 days post anthesis	7.42557
SRR768130	whole fruit	no	60 days post anthesis	10.953
SRR768131	whole fruit	no	87 days post anthesis	9.5246
SRR7343308	immature fruit flesh	no	immature	11.7589
SRR7343309	immature fruit flesh	no	immature	12.8105
SRR6320494	ripe fruit flesh	no	mature	6.77947
SRR5405143	ripe fruit peel	no	mature	6.24566
SRR6320572	ripe fruit peel	no	mature	9.39426
SRR7403504	fruit	uninfected	mature	5.84363
SRR7403506	fruit	uninfected	mature	5.831
SRR7403507	fruit	uninfected	mature	5.08565
SRR7403500	fruit	infected with penicillium expansum	mature	3.74276
SRR7403501	fruit	infected with penicillium expansum	mature	4.378
SRR7403508	fruit	infected with penicillium expansum	mature	3.25027
SRR7403502	fruit	infected with penicillium expansum	mature	3.27774
SRR7403503	fruit	infected with penicillium expansum	mature	4.23046
SRR7403505	fruit	infected with penicillium expansum	mature	4.16831
SRR1613973	Central seeds	no	20DAPF	8.76048
SRR1613974	Central seeds	no	20DAPF	8.73493
SRR1613975	Central seeds	no	20DAPF	6.67391
SRR1613976	Lateral seeds	no	20DAPF	6.08858
SRR1613977	Lateral seeds	no	20DAPF	6.77782
SRR1613978	Lateral seeds	no	20DAPF	7.57837
SRR3744786	stem	no	mature	10.4362
SRR3744787	stem	no	mature	10.5134
SRR3744772	stem	no	mature	11.3266
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.2371
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.7162
SRR1089478	leaf	Virus-free	plantlets	11.1676
SRR1089477	leaf	ASGV-infected	plantlets	13.521
SRR767660	leaf	uninfected	fully developed	8.09497
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	16.5169
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	11.4486
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.09797
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.02077
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.64642
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.727
SRR6308182	young leaf	no	immature leaves	11.116
SRR3744769	leaf	no	mature	10.8822
SRR3744770	leaf	no	mature	10.5468
SRR3744771	leaf	no	mature	10.4476
SRR5405145	leaf	no	mature	9.86991
SRR6320561	leaf	no	mature	10.325