Gene detail

Detail information of MD13G1033300 Annotation

Gene ID	Annotation
MD13G1033300	DEA(D/H)-box RNA helicase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0550	crossover junction endonuclease MUS81 [EC:3.1.22.-] DNA topoisomerase III [EC:5.99.1.2] UV excision repair protein RAD23 ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] atypical dual specificity phosphatase [EC:3.1.3.16 3.1.3.48]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1033300	mRNA	Chr13	2329516	2337569	-

Sequences

CDS:

MD13G1033300

ATGAAGGACCGGCCTCCTTCCTCGTACGGCTCCGTCTACGTCCCTCCCCACCACCGCCCCCGCTCCGCCATCACCACCCCCAATTACACCTCCCCTACTTCAGTCGGCTCCAAGCTCCGCGACAACCAGACTGCTGCTGCTCTTAACCAGAGGAGCAGCACCATTGGTGCTCTGGCGTACTACCAGAATCAGCAGCAGCAGCAGCAGCATTTTCAGAAGCCCAAGCTTCAGCACTCTTCTGCTTACGACGACGGCGTTTCCGAGGAAGGCTCCGATCGCGAAGTTCAGTTGCCGTCGTATCCGACACAGAGTCCTTACTCATCTGATAATGAGTGGGAACGGAAATTTACCACGCTGTTACGTGACAAGGAGAAGCAAGAATTGGTTACGAGGGAGAAAAAAGATAGATGCGACTTTGAGAAAATAGCTGCTTTGGCAAGCAGAATGGGGCTTTATAGCCATCTATATTCGAAAGTTGCTGTTTTTAGTAAGGTCCCACTGCCAAACTACAGATTTGATCTGGATGATAGGCGCCCTCAGAGAGAGGTGACCTTGCCTCATGGGTTGCTGAGGAGAGTTGAGGGATATCTTGGAGAGTTCCTTTCCCAGAAGTCTAGGACAAAGGAAGATCTTTCCTTTTCGATATCAAACAGTAGTGGCAGCATTGCTACTGATGAAGGGCTTTTTGAGCAACCAGAATCATTCGCGTCAAGTAAGGGTGTTATGGAAAAGCTTCTTTGGCGGACAAGTACGCAGATGCGTGATAAGCAACAAGCTTGGCAGGAATCTCCTCAAGGTAGAAAAATGCTTGAACTTCGCAGAAGTCTTCCTGCTTATAAAGAGAAGGATGCATTATTGGCAGCAATTTCACGAGATCAGGTTGTTATCATATCAGGTGAAACTGGCTGTGGCAAGACTACTCAAATTCCACAATTCATTTTAGAATCTGAGATAGAAGCTGTTCGTGGAGCTGTTTGTAGTATTATATGTACACAGCCTAGACGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCTTCAGAGAGAGGGGAGAAATTGGGTGACTCGGTTGGGTATAAGGTTCGCTTAGAAGGTATGAAGGGGAGGGACACTCGCCTTCTCTTTTGCACCACTGGCATTTTGTTGAGAAGATTGCTAGTTGATAGAAATTTGAAAGGTGTAACTCATGTGATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTGCTTATTGTTCTCAAGGATCTCCTTCCTCGGCGACCAGAACTGAGGCTGATTTTGATGAGTGCAACCCTAGATTCTGAGCTTTTCTCATCCTACTTTGGTAGAGCTCAGATAATTCATGTTCCAGGTTTTACATATCCAGTTCAAACTCATTTTCTGGAGGATGTTCTGGAAATTACGGGCTGCAAATTAACTCCATACAATCAGATTGATGATTATGGTCAAGATAAGATGTGGAAAATGAGCAAACAGGCACCAAGAAAGAGGAAAAGCCAAATTGCTTTTGTTGTTGAGGATGCACTTAAAGCAGCCAATTTTAAGGGGTATAGTCTACAGACTCAGGAGTCTCTAGCATGTTGGAATCCTGATGGTATTGGTTTTTATCTCATCGAGTATCTCTTGTGCAATATCTGTGAGAGTGAAAAGCCAGGTGCCATTCTAGTTTTTATGACTGGGTGGGATGACATCAATTCTCTGAAGGAAAAGTTACATGCCAATCCTCTATTAGGTGATCCAAGCCGAGTCTTGTTACTAGCATGCCATGGTTCTATGGCGAGTACTGAGCAGAGGTTAATATTTGATGAGCCTGAGGATGGAGTGAGGAAAATAGTGCTGGCTACTAATATTGCTGAGACAAGCATCACGATTAATGATGTTGTTTTTGTACTTGATTGTGGAAAGGCAAAAGAGACTTCATATGACGCACTGAATAATACTCCTTGTTTACTTCCTTCCTGGATTTCCAAGGTTTCTGCCCAACAAAGAAGAGGAAGAGCAGGACGTGTCCAGCCCGGGGAATGTTATCATCTCTATCCTAGATGTGTGTATGACGCATTTGCAGAGTATCAGTTACCAGAGATTTTGAGGACACCTCTGCAGTCTCTGTGTCTGCAAATAAAAAGTTTAAACCTCGGAAGCATTTCTGAGTTCTTATCTAGGGCTCTGCAGTCACCAGAGTTACTTGCGGTGCAAAACGCCATAGAGTATTTAAAGATCACTGGGGCCTTGGATGAGAAAGAGAATCTGACTGTTTTAGGACGCTATCTAACTATGCTTCCTGTGGAGCCAAAACTTGGAAAGATGCTCTTGCTAGGCGCCATTTTCAACTGCCTGGATCCAGTTTTGACTATTGTTTCTGGGCTTAGTGTCAGAGATCCTTTCCTAACACCATTTGACAAGAAAGACCTTGCTGAGGCTGCAAAATCTCAGTTTTCCCGAGATAATAGTGATCACCTTGCACTTGTGCGGGCCTATGAGGGCTGGAAGGTTGCTGAAAGAGACTTTGCTGGATATGACTATTGCTGGAAGAATTTTCTTTCAGCACAATCGATGAAAGCTATTGATTCCCTTAGGAAGGAGTTCTTCTCTTTGCTTAGGGATACTGATCTTGTTGATGCCAACACCACCACTCATAACGCATGGAGTTATGATGAGCATCTCGTCCGTGCAGTTATTTGCTGTGGCCTGTATCCTGGAATCTGCTCTGTTGTGCACAATGAGAAGTCATTTTCACTGAAAACAATGGAGGATGGGCAGGTGCTGCTATACTCGAACTCTGTCAATGCTAGGGATTCCAAAATTCCATATCCGTGGCTGGTTTTCAATGAGAAGATAAAGGTGAACTCTGTTTTCCTACGGGATTCAACAGCTGTGTCTGACTCAGTGCTCCTCCTATTTGGTGGAAGTTTTTCGAAAGGGGATACCGATGGACACTTGAAAATGCTGGGAGGATATTTGGAATTCTTCATGAAGCCTGCTGTAGCAGAAATGTATCAATGCTTAAAAGGGGAACTTGACCAGTTAATTCAAATCAAACTACTGAACCCCAGGATGGACACACACAGTTACCATGAACTTCTTTCTGCAATGCGGTTCCTGCTTTCGGAGGATCAAGGCGAAGGTAGATTTGTATTTGGCCGCCAGGTCCTTGCACTCTCAAAGTCAAAGCCATCTGTGGTGGCAGCACAGCCAGCCTTGGTTTCAAGAACTGAAAGTGGACCCGGGGGTGACAATTCTAAGAGTCAGCTCCAGACATTGCTCACACGAGCAGGATACAACGCTCCTACCTACAAAACTATGCAACTGAAGAACAGCCAGTTCCGAGCTACAGTGGAGTTTAACGGAATGCAAATTATGGGCCACCCATGTAACAACAAGAAGAGTGCAGAAAAAGATGCGGCAGCGGAGGCCATTCAGTGGCTGGTGAGTGGAACACAAATGGGCCATGAGGACATCAATCACATGTCAATGATGTTAAAGAGAAGCAAAAAGGACCACAATTAAATCAACTATTTGCCGATTTTCCCTCTCGAAAAAGGACTGTATGAGAGAGCGGTGAGCACAACTTGTGGCGCTTGCTTCGGAGAGACTTAGAATTAATGTGGTCGCAATGTCCGACTTGCTACCTGCCGCAGAAAACAGTAAAGGTCGGGCAGCATTATCACCATATAAAAGCCAGCGGATCTGGCCTTTTATCTACATTCTTTTACACCCACATTTGATCAGACATCACCAACAAATAGTATCCGAGGTGCCAAACTTGTGGTTGGTTTTGGCTTGGTGGATCATCTGCCTCGGGACACAAAGCTACATCGAGCTAAAGTTGACGACACGGAAATCGACATGTTTTGGCCATTTCAGTTGTTGCATTTGGATCAAGACACTGATGGTGACCAGGAGAGCTTATCAAAGATGGGTGCAATTGTAGTTGAACAGTACTTAGAAAGTGTCAAGGAGAAATATACACAACGCTTTCACACAAGTAAAAAAAGGTGATTTCGCACGCCATCGCCGGATCGGATTTTCACTTTGCTGTAACATATTATTCTTCTGGATAGCTTGCAAGGCTATTGTACTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G01130.1	1	DEA(D/H)-box RNA helicase family protein
Pyrus x bretschneideri	Pbr028763.3	1	-
Solanum lycopersicum	Solyc04g007510.2.1	1	DEA(D/H)-box RNA helicase family protein
Populus trichocarpa	Potri.010G117800.1	1	DEA(D/H)-box RNA helicase family protein
Nicotiana benthamiana	Niben101Scf13601g00039.1	1	ATP-dependent RNA helicase A

Gene Ontology

GO term	Description	Category
GO:0008026	ATP-dependent helicase activity	molecular_function
GO:0003676	nucleic acid binding	molecular_function
GO:0005524	ATP binding	molecular_function

KEGG

KO	Description	Enzyme
K14442	ATP-dependent RNA helicase DHX36	EC:3.6.4.13

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.25	DEAD	286	437	4.40E-07
PF04408.19	HA2	737	825	1.40E-21
PF07717.12	OB_NTP_bind	881	973	2.40E-15
PF00035.21	dsrm	1083	1145	1.60E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.15048
SRR5252888	dormant buds	no	dormant buds(0 month)	3.42633
SRR5252889	dormant buds	no	dormant buds(0 month)	4.14563
SRR5252886	dormant buds	no	dormant buds(1 months)	2.99837
SRR5252887	dormant buds	no	dormant buds(1 months)	2.98109
SRR5252884	dormant buds	no	dormant buds(2 months)	1.72374
SRR5252882	dormant buds	no	dormant buds(3 months)	3.53995
SRR5252883	dormant buds	no	dormant buds(3 months)	2.42208
SRR5252880	dormant buds	no	dormant buds(4 months)	3.98478
SRR5252881	dormant buds	no	dormant buds(4 months)	3.4426
SRR5252878	bud break	no	bud break	4.62364
SRR5252879	bud break	no	bud break	4.40115
SRR3744766	flower	no	mature	0.671518
SRR3744767	flower	no	mature	0.764065
SRR3744768	flower	no	mature	0.836938
SRR6308190	stigmas	no	open flowers	1.15681
SRR6308181	styles	no	open flowers	1.22456
SRR6308188	filaments	no	open flowers	0.596827
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.36759
SRR6308192	pollen	no	open flowers	6.24734
SRR6308191	petals	no	open flowers	0.803373
SRR6308194	sepals	no	open flowers	1.59225
SRR6308193	receptacles	no	open flowers	1.41116
SRR6308189	ovaries	no	open flowers	1.56081
SRR3384922	fruit	no	1 week after full bloom	1.15591
SRR3384921	fruit	no	2 week after full bloom	1.2095
SRR3384920	fruit	no	3 week after full bloom	1.0099
SRR3384919	fruit	no	4 week after full bloom	1.03478
SRR3384923	fruit	no	5 week after full bloom	0.887273
SRR3384918	fruit	no	6 week after full bloom	0.790174
SRR3384917	fruit	no	8 week after full bloom	0.855606
SRR3384916	fruit	no	10 week after full bloom	0.808366
SRR3384915	fruit	no	12 week after full bloom	0.75719
SRR3384914	fruit	no	14 week after full bloom	0.657064
SRR3384913	fruit	no	16 week after full bloom	1.02429
SRR3384912	fruit	no	18 week after full bloom	0.555388
SRR3384911	fruit	no	19 week after full bloom	0.676096
SRR3384910	fruit	no	20 week after full bloom	0.721861
SRR768128	whole fruit	no	25 days post anthesis	1.90668
SRR768129	whole fruit	no	35 days post anthesis	0.893702
SRR768130	whole fruit	no	60 days post anthesis	1.1987
SRR768131	whole fruit	no	87 days post anthesis	0.902272
SRR7343308	immature fruit flesh	no	immature	1.81908
SRR7343309	immature fruit flesh	no	immature	1.81381
SRR6320494	ripe fruit flesh	no	mature	0.766502
SRR5405143	ripe fruit peel	no	mature	0.695515
SRR6320572	ripe fruit peel	no	mature	0.287106
SRR7403504	fruit	uninfected	mature	0.96463
SRR7403506	fruit	uninfected	mature	1.34733
SRR7403507	fruit	uninfected	mature	1.25021
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.137472
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0460061
SRR1613973	Central seeds	no	20DAPF	0.814471
SRR1613974	Central seeds	no	20DAPF	0.940539
SRR1613975	Central seeds	no	20DAPF	0.937491
SRR1613976	Lateral seeds	no	20DAPF	0.884107
SRR1613977	Lateral seeds	no	20DAPF	0.92725
SRR1613978	Lateral seeds	no	20DAPF	0.855753
SRR3744786	stem	no	mature	0.865685
SRR3744787	stem	no	mature	0.579201
SRR3744772	stem	no	mature	0.853618
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.17029
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.41686
SRR1089478	leaf	Virus-free	plantlets	1.19067
SRR1089477	leaf	ASGV-infected	plantlets	1.03904
SRR767660	leaf	uninfected	fully developed	0.566522
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.549465
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.54238
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.631717
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.192579
SRR6308182	young leaf	no	immature leaves	1.92071
SRR3744769	leaf	no	mature	0.600129
SRR3744770	leaf	no	mature	0.788057
SRR3744771	leaf	no	mature	0.654758
SRR5405145	leaf	no	mature	0.990825
SRR6320561	leaf	no	mature	0.734275