Gene detail

Detail information of MD13G1073100 Annotation

Gene ID	Annotation
MD13G1073100	origin recognition complex protein 6

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0691	Unknown Function Kinase DNA polymerase epsilon subunit 2 [EC:2.7.7.7] wee1-like protein kinase [EC:2.7.11.1] epsilon DNA polymerase complex nuclear origin of replication recognition complex DNA-dependent DNA replication DNA replication initiation replication fork protection DNA replication checkpoint

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1073100	mRNA	Chr13	5137273	5139745	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G26840.1	1	ATORC6;ORC6\|ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6;origin recognition complex protein 6
Prunus persica	Prupe.1G273100.1.p	1	origin recognition complex protein 6
Pyrus communis	PCP003326.1	1	-
Pyrus x bretschneideri	Pbr039101.1	1	-
Rosa multiflora	Rmu_sc0006000.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0023432.1_g000001.1	0.906	-
Rubus occidentalis	Ro04_G00079	1	-
Vitis vinifera	GSVIVT01020002001	1	origin recognition complex protein 6
Solanum lycopersicum	Solyc05g007450.2.1	1	origin recognition complex protein 6
Populus trichocarpa	Potri.011G083700.1	1	origin recognition complex protein 6
Nicotiana benthamiana	Niben101Scf05229g00003.1	1	Origin recognition complex subunit 6
Nicotiana benthamiana	Niben101Scf07058g02006.1	0.829	Origin recognition complex subunit 6
Oryza sativa	LOC_Os07g43540.1	1	"ORC6 - Putative origin recognition complex subunit 6, expressed"
Zea mays	GRMZM5G825512_P01	1	Origin recognition complex subunit 6

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0006260	DNA replication	biological_process
GO:0005664	nuclear origin of replication recognition complex	cellular component

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.7565
SRR5252888	dormant buds	no	dormant buds(0 month)	0.244087
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0942537
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0.350847
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.191717
SRR5252880	dormant buds	no	dormant buds(4 months)	0.175589
SRR5252881	dormant buds	no	dormant buds(4 months)	1.07193
SRR5252878	bud break	no	bud break	5.42166
SRR5252879	bud break	no	bud break	5.23629
SRR3744766	flower	no	mature	0.335246
SRR3744767	flower	no	mature	0.29412
SRR3744768	flower	no	mature	0.396667
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.118742
SRR6308188	filaments	no	open flowers	0.357723
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.152546
SRR6308194	sepals	no	open flowers	0.295743
SRR6308193	receptacles	no	open flowers	0.707459
SRR6308189	ovaries	no	open flowers	0.383038
SRR3384922	fruit	no	1 week after full bloom	1.72968
SRR3384921	fruit	no	2 week after full bloom	3.92285
SRR3384920	fruit	no	3 week after full bloom	1.72707
SRR3384919	fruit	no	4 week after full bloom	1.81313
SRR3384923	fruit	no	5 week after full bloom	0.827652
SRR3384918	fruit	no	6 week after full bloom	0.383895
SRR3384917	fruit	no	8 week after full bloom	0.554245
SRR3384916	fruit	no	10 week after full bloom	0.432006
SRR3384915	fruit	no	12 week after full bloom	0.425954
SRR3384914	fruit	no	14 week after full bloom	0.413115
SRR3384913	fruit	no	16 week after full bloom	0.389264
SRR3384912	fruit	no	18 week after full bloom	0.091326
SRR3384911	fruit	no	19 week after full bloom	0.175185
SRR3384910	fruit	no	20 week after full bloom	0.205747
SRR768128	whole fruit	no	25 days post anthesis	2.07678
SRR768129	whole fruit	no	35 days post anthesis	3.69242
SRR768130	whole fruit	no	60 days post anthesis	0.546238
SRR768131	whole fruit	no	87 days post anthesis	0.685263
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.486364
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.272794
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.228263
SRR7403506	fruit	uninfected	mature	0.0482252
SRR7403507	fruit	uninfected	mature	0.458074
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.350193
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.487953
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0734356
SRR1613974	Central seeds	no	20DAPF	0.117721
SRR1613975	Central seeds	no	20DAPF	0.205489
SRR1613976	Lateral seeds	no	20DAPF	0.288197
SRR1613977	Lateral seeds	no	20DAPF	0.306548
SRR1613978	Lateral seeds	no	20DAPF	0.319977
SRR3744786	stem	no	mature	0.153318
SRR3744787	stem	no	mature	0.18973
SRR3744772	stem	no	mature	0.113536
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.19905
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.9299
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.489181
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.26491
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.414651
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.481324
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	7.02838
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.0826639
SRR3744771	leaf	no	mature	0.0407751
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0