Gene detail

Detail information of MD13G1085200 Annotation

Gene ID	Annotation
MD13G1085200	response regulator 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1085200	mRNA	Chr13	5983543	5984971	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	Orphans

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G59940.1	1	ARR3\|response regulator 3
Prunus persica	Prupe.1G261500.1.p	1	response regulator 3
Pyrus communis	PCP030484.1	1	-
Rosa multiflora	Rmu_sc0000096.1_g000023.1	1	-
Rubus occidentalis	Ro04_G00382	1	-
Fragaria vesca	mrna00726.1	1	response regulator 3
Vitis vinifera	GSVIVT01020146001	1	response regulator 3
Populus trichocarpa	Potri.010G037800.1	1	response regulator 3
Nicotiana benthamiana	Niben101Scf07437g05009.1	1	response regulator 3 LENGTH=231

Gene Ontology

GO term	Description	Category
GO:0000160	phosphorelay signal transduction system	biological_process
GO:0000156	phosphorelay response regulator activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.20	Response_reg	29	148	1.30E-22

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	26.3517
SRR5252888	dormant buds	no	dormant buds(0 month)	11.6519
SRR5252889	dormant buds	no	dormant buds(0 month)	10.4985
SRR5252886	dormant buds	no	dormant buds(1 months)	6.57841
SRR5252887	dormant buds	no	dormant buds(1 months)	8.52096
SRR5252884	dormant buds	no	dormant buds(2 months)	7.50183
SRR5252882	dormant buds	no	dormant buds(3 months)	5.77418
SRR5252883	dormant buds	no	dormant buds(3 months)	13.1559
SRR5252880	dormant buds	no	dormant buds(4 months)	17.8119
SRR5252881	dormant buds	no	dormant buds(4 months)	14.0525
SRR5252878	bud break	no	bud break	6.43553
SRR5252879	bud break	no	bud break	3.47171
SRR3744766	flower	no	mature	21.8527
SRR3744767	flower	no	mature	20.7959
SRR3744768	flower	no	mature	21.7559
SRR6308190	stigmas	no	open flowers	13.6194
SRR6308181	styles	no	open flowers	16.89
SRR6308188	filaments	no	open flowers	11.0301
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.85647
SRR6308192	pollen	no	open flowers	1.04517
SRR6308191	petals	no	open flowers	4.55201
SRR6308194	sepals	no	open flowers	3.6771
SRR6308193	receptacles	no	open flowers	8.44432
SRR6308189	ovaries	no	open flowers	13.1446
SRR3384922	fruit	no	1 week after full bloom	15.8094
SRR3384921	fruit	no	2 week after full bloom	21.812
SRR3384920	fruit	no	3 week after full bloom	18.1909
SRR3384919	fruit	no	4 week after full bloom	20.2678
SRR3384923	fruit	no	5 week after full bloom	29.7006
SRR3384918	fruit	no	6 week after full bloom	22.6019
SRR3384917	fruit	no	8 week after full bloom	31.4187
SRR3384916	fruit	no	10 week after full bloom	33.9412
SRR3384915	fruit	no	12 week after full bloom	36.2617
SRR3384914	fruit	no	14 week after full bloom	34.2648
SRR3384913	fruit	no	16 week after full bloom	24.3891
SRR3384912	fruit	no	18 week after full bloom	42.7786
SRR3384911	fruit	no	19 week after full bloom	29.5309
SRR3384910	fruit	no	20 week after full bloom	20.8711
SRR768128	whole fruit	no	25 days post anthesis	21.0481
SRR768129	whole fruit	no	35 days post anthesis	22.1418
SRR768130	whole fruit	no	60 days post anthesis	22.4548
SRR768131	whole fruit	no	87 days post anthesis	18.6739
SRR7343308	immature fruit flesh	no	immature	9.20327
SRR7343309	immature fruit flesh	no	immature	9.18999
SRR6320494	ripe fruit flesh	no	mature	14.7401
SRR5405143	ripe fruit peel	no	mature	2.44152
SRR6320572	ripe fruit peel	no	mature	14.2834
SRR7403504	fruit	uninfected	mature	7.03751
SRR7403506	fruit	uninfected	mature	6.0432
SRR7403507	fruit	uninfected	mature	7.06139
SRR7403500	fruit	infected with penicillium expansum	mature	15.7245
SRR7403501	fruit	infected with penicillium expansum	mature	14.6278
SRR7403508	fruit	infected with penicillium expansum	mature	14.9388
SRR7403502	fruit	infected with penicillium expansum	mature	9.41462
SRR7403503	fruit	infected with penicillium expansum	mature	7.80523
SRR7403505	fruit	infected with penicillium expansum	mature	8.47762
SRR1613973	Central seeds	no	20DAPF	7.66892
SRR1613974	Central seeds	no	20DAPF	7.39295
SRR1613975	Central seeds	no	20DAPF	8.28854
SRR1613976	Lateral seeds	no	20DAPF	7.38084
SRR1613977	Lateral seeds	no	20DAPF	10.3107
SRR1613978	Lateral seeds	no	20DAPF	7.68025
SRR3744786	stem	no	mature	28.7367
SRR3744787	stem	no	mature	27.5434
SRR3744772	stem	no	mature	28.938
SRX765691	seedling shoot apex	no	4-6 week old seedling	21.8706
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	17.7727
SRR1089478	leaf	Virus-free	plantlets	7.52664
SRR1089477	leaf	ASGV-infected	plantlets	7.41956
SRR767660	leaf	uninfected	fully developed	60.5627
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	14.4146
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	58.3331
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	57.5074
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	39.6634
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	41.8612
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	36.1457
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	34.4617
SRR6308182	young leaf	no	immature leaves	12.0127
SRR3744769	leaf	no	mature	57.8401
SRR3744770	leaf	no	mature	56.2608
SRR3744771	leaf	no	mature	55.3391
SRR5405145	leaf	no	mature	9.51498
SRR6320561	leaf	no	mature	26.6211