| Gene ID | Annotation |
|---|---|
| MD13G1091200 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0349 | protein farnesyltransferase activity RNA binding protein farnesyltransferase complex protein farnesyltransferase subunit beta [EC:2.5.1.58] cleavage and polyadenylation specificity factor subunit 6/7 RNA-binding protein 25 histone H3-K4 methylation farnesyltranstransferase activity nucleotide binding embryonic meristem initiation protein import into peroxisome matrix fatty acid beta-oxidation protein prenylation nucleic acid binding |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD13G1091200 | mRNA | Chr13 | 6453998 | 6457283 | - |
| CDS: |
| MD13G1091200 |
| Protein: |
| MD13G1091200 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G60200.1 | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Prunus persica | Prupe.1G254700.1.p | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Prunus persica | Prupe.1G254700.2.p | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Prunus persica | Prupe.1G254700.3.p | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Prunus persica | Prupe.1G254700.4.p | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Prunus persica | Prupe.1G254700.5.p | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Pyrus communis | PCP020464.1 | 1 | - |
| Pyrus x bretschneideri | Pbr034876.1 | 1 | - |
| Rubus occidentalis | Ro04_G00333 | 1 | - |
| Fragaria vesca | mrna00656.1 | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Vitis vinifera | GSVIVT01020233001 | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Populus trichocarpa | Potri.010G094700.1 | 1 | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein |
| Nicotiana benthamiana | Niben101Scf12383g01002.1 | 1 | RNA-binding protein 25 |
| Nicotiana benthamiana | Niben101Scf03066g02005.1 | 0.668 | RNA-binding protein 25 |
| Oryza sativa | LOC_Os08g32100.1 | 1 | "transposon protein, putative, CACTA, En/Spm sub-class, expressed" |
| Zea mays | GRMZM5G895175_P01 | 1 | - |
| Zea mays | GRMZM2G132857_P01 | 1 | - |
| GO term | Description | Category |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0006397 | mRNA processing | biological_process |
| KO | Description | Enzyme |
|---|---|---|
| K12822 | RNA-binding protein 25 | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.18 | RRM_1 | 53 | 121 | 4.10E-08 |
 |