Gene detail

Detail information of MD13G1097400 Annotation

Gene ID	Annotation
MD13G1097400	Clathrin adaptor complexes medium subunit family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0744	acidic leucine-rich nuclear phosphoprotein 32 family member B AP-1 complex subunit mu clathrin adaptor complex clathrin vesicle coat plant-type vacuole proton-transporting ATPase activity MAP2K G patch domain and KOW motifs-containing protein RNA-binding protein 39 mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] serine/arginine repetitive matrix protein 2 SNW domain-containing protein 1

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1097400	mRNA	Chr13	6917587	6921241	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G60780.1	1	AP1M2;HAP13\|adaptor protein-1 mu-adaptin 2;HAPLESS 13
Prunus persica	Prupe.1G248000.1.p	1	Clathrin adaptor complexes medium subunit family protein
Pyrus communis	PCP039504.1	1	-
Pyrus communis	PCP008294.1	1	-
Pyrus x bretschneideri	Pbr036150.1	1	-
Rosa multiflora	Rmu_sc0000354.1_g000005.1	1	-
Rubus occidentalis	Ro04_G02802	1	-
Vitis vinifera	GSVIVT01004093001	1	Clathrin adaptor complexes medium subunit family protein
Populus trichocarpa	Potri.010G044700.2	1	Clathrin adaptor complexes medium subunit family protein
Nicotiana benthamiana	Niben101Scf00650g02015.1	1	AP-1 complex subunit mu-2
Oryza sativa	LOC_Os01g50770.1	1	"adaptor complexes medium subunit family domain containingprotein, expressed"
Oryza sativa	LOC_Os05g46550.1	1	"adaptor complexes medium subunit family domain containingprotein, expressed"
Zea mays	GRMZM2G162145_P01	1	-
Zea mays	GRMZM2G436835_P01	0.97	-

Gene Ontology

GO term	Description	Category
GO:0030131	clathrin adaptor complex	cellular component
GO:0006886	intracellular protein transport	biological_process
GO:0016192	vesicle-mediated transport	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K12393	AP-1 complex subunit mu	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.16	Clat_adaptor_s	5	131	2.80E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	27.1674
SRR5252888	dormant buds	no	dormant buds(0 month)	26.6524
SRR5252889	dormant buds	no	dormant buds(0 month)	22.9157
SRR5252886	dormant buds	no	dormant buds(1 months)	32.3555
SRR5252887	dormant buds	no	dormant buds(1 months)	40.0597
SRR5252884	dormant buds	no	dormant buds(2 months)	20.8533
SRR5252882	dormant buds	no	dormant buds(3 months)	25.9305
SRR5252883	dormant buds	no	dormant buds(3 months)	31.3494
SRR5252880	dormant buds	no	dormant buds(4 months)	24.4621
SRR5252881	dormant buds	no	dormant buds(4 months)	23.5352
SRR5252878	bud break	no	bud break	37.4412
SRR5252879	bud break	no	bud break	47.9859
SRR3744766	flower	no	mature	17.5056
SRR3744767	flower	no	mature	16.3615
SRR3744768	flower	no	mature	16.5397
SRR6308190	stigmas	no	open flowers	24.5637
SRR6308181	styles	no	open flowers	31.1826
SRR6308188	filaments	no	open flowers	37.7481
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	35.5547
SRR6308192	pollen	no	open flowers	23.9738
SRR6308191	petals	no	open flowers	29.2833
SRR6308194	sepals	no	open flowers	31.6844
SRR6308193	receptacles	no	open flowers	26.5555
SRR6308189	ovaries	no	open flowers	30.2603
SRR3384922	fruit	no	1 week after full bloom	26.667
SRR3384921	fruit	no	2 week after full bloom	27.7146
SRR3384920	fruit	no	3 week after full bloom	21.5745
SRR3384919	fruit	no	4 week after full bloom	31.5941
SRR3384923	fruit	no	5 week after full bloom	27.5234
SRR3384918	fruit	no	6 week after full bloom	35.1814
SRR3384917	fruit	no	8 week after full bloom	28.6754
SRR3384916	fruit	no	10 week after full bloom	28.5777
SRR3384915	fruit	no	12 week after full bloom	26.0239
SRR3384914	fruit	no	14 week after full bloom	27.7279
SRR3384913	fruit	no	16 week after full bloom	28.8382
SRR3384912	fruit	no	18 week after full bloom	29.6172
SRR3384911	fruit	no	19 week after full bloom	28.0766
SRR3384910	fruit	no	20 week after full bloom	31.942
SRR768128	whole fruit	no	25 days post anthesis	22.3554
SRR768129	whole fruit	no	35 days post anthesis	31.8733
SRR768130	whole fruit	no	60 days post anthesis	30.5504
SRR768131	whole fruit	no	87 days post anthesis	40.2977
SRR7343308	immature fruit flesh	no	immature	33.4884
SRR7343309	immature fruit flesh	no	immature	37.3261
SRR6320494	ripe fruit flesh	no	mature	24.318
SRR5405143	ripe fruit peel	no	mature	22.324
SRR6320572	ripe fruit peel	no	mature	19.1686
SRR7403504	fruit	uninfected	mature	18.5052
SRR7403506	fruit	uninfected	mature	18.3783
SRR7403507	fruit	uninfected	mature	18.0865
SRR7403500	fruit	infected with penicillium expansum	mature	34.5351
SRR7403501	fruit	infected with penicillium expansum	mature	36.6202
SRR7403508	fruit	infected with penicillium expansum	mature	35.3804
SRR7403502	fruit	infected with penicillium expansum	mature	29.2479
SRR7403503	fruit	infected with penicillium expansum	mature	30.9637
SRR7403505	fruit	infected with penicillium expansum	mature	29.998
SRR1613973	Central seeds	no	20DAPF	27.6087
SRR1613974	Central seeds	no	20DAPF	28.9428
SRR1613975	Central seeds	no	20DAPF	23.6161
SRR1613976	Lateral seeds	no	20DAPF	26.4707
SRR1613977	Lateral seeds	no	20DAPF	26.0223
SRR1613978	Lateral seeds	no	20DAPF	27.3468
SRR3744786	stem	no	mature	12.7107
SRR3744787	stem	no	mature	12.8741
SRR3744772	stem	no	mature	11.5985
SRX765691	seedling shoot apex	no	4-6 week old seedling	25.4463
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	21.8024
SRR1089478	leaf	Virus-free	plantlets	13.1285
SRR1089477	leaf	ASGV-infected	plantlets	12.432
SRR767660	leaf	uninfected	fully developed	6.22712
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	12.0083
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.0264
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	16.758
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.85646
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.03884
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	13.2322
SRR6308182	young leaf	no	immature leaves	27.4892
SRR3744769	leaf	no	mature	10.7347
SRR3744770	leaf	no	mature	10.5864
SRR3744771	leaf	no	mature	10.7216
SRR5405145	leaf	no	mature	12.4365
SRR6320561	leaf	no	mature	17.5563