Gene detail

Detail information of MD13G1117200 Annotation

Gene ID	Annotation
MD13G1117200	Microsomal signal peptidase 12 kDa subunit (SPC12)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1117200	mRNA	Chr13	8573123	8574091	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G40042.1	1	Microsomal signal peptidase 12 kDa subunit (SPC12)
Prunus persica	Prupe.1G228300.1.p	1	Microsomal signal peptidase 12 kDa subunit (SPC12)
Prunus persica	Prupe.1G228300.2.p	1	Microsomal signal peptidase 12 kDa subunit (SPC12)
Prunus persica	Prupe.1G228300.3.p	1	Microsomal signal peptidase 12 kDa subunit (SPC12)
Rosa multiflora	Rmu_co8341757.1_g000001.1	1	-
Rubus occidentalis	Ro07_G34435	1	-
Vitis vinifera	GSVIVT01010448001	1	Microsomal signal peptidase 12 kDa subunit (SPC12)
Populus trichocarpa	Potri.008G175800.1	1	Microsomal signal peptidase 12 kDa subunit (SPC12)
Nicotiana benthamiana	Niben101Scf08088g03014.1	1	Signal peptidase complex subunit 1
Nicotiana benthamiana	Niben101Scf01020g02011.1	0.899	Signal peptidase complex subunit 1
Nicotiana benthamiana	Niben101Scf05346g06007.1	0.623	Signal peptidase complex subunit 1
Oryza sativa	LOC_Os12g25210.1	1	"signal peptidase complex subunit 1, putative"
Zea mays	GRMZM2G112366_P01	1	Signal peptidase complex subunit 1;
Zea mays	GRMZM2G154151_P01	0.892	Signal peptidase complex subunit 1

Gene Ontology

GO term	Description	Category
GO:0005787	signal peptidase complex	cellular component
GO:0008233	peptidase activity	molecular_function
GO:0016021	integral component of membrane	cellular component
GO:0006465	signal peptide processing	biological_process

KEGG

KO	Description	Enzyme
K12946	signal peptidase complex subunit 1	EC:3.4.-.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	46.284
SRR5252888	dormant buds	no	dormant buds(0 month)	6.79687
SRR5252889	dormant buds	no	dormant buds(0 month)	8.31124
SRR5252886	dormant buds	no	dormant buds(1 months)	7.67473
SRR5252887	dormant buds	no	dormant buds(1 months)	6.62734
SRR5252884	dormant buds	no	dormant buds(2 months)	4.07072
SRR5252882	dormant buds	no	dormant buds(3 months)	4.49098
SRR5252883	dormant buds	no	dormant buds(3 months)	6.89565
SRR5252880	dormant buds	no	dormant buds(4 months)	5.29695
SRR5252881	dormant buds	no	dormant buds(4 months)	5.87939
SRR5252878	bud break	no	bud break	6.0876
SRR5252879	bud break	no	bud break	9.22566
SRR3744766	flower	no	mature	78.703
SRR3744767	flower	no	mature	86.3023
SRR3744768	flower	no	mature	86.7505
SRR6308190	stigmas	no	open flowers	153.937
SRR6308181	styles	no	open flowers	93.5898
SRR6308188	filaments	no	open flowers	31.3772
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	78.2728
SRR6308192	pollen	no	open flowers	343.951
SRR6308191	petals	no	open flowers	23.5059
SRR6308194	sepals	no	open flowers	30.7322
SRR6308193	receptacles	no	open flowers	33.1822
SRR6308189	ovaries	no	open flowers	45.0263
SRR3384922	fruit	no	1 week after full bloom	76.102
SRR3384921	fruit	no	2 week after full bloom	66.0248
SRR3384920	fruit	no	3 week after full bloom	67.0659
SRR3384919	fruit	no	4 week after full bloom	45.4591
SRR3384923	fruit	no	5 week after full bloom	55.8803
SRR3384918	fruit	no	6 week after full bloom	68.2665
SRR3384917	fruit	no	8 week after full bloom	70.5098
SRR3384916	fruit	no	10 week after full bloom	42.6232
SRR3384915	fruit	no	12 week after full bloom	56.9577
SRR3384914	fruit	no	14 week after full bloom	35.8682
SRR3384913	fruit	no	16 week after full bloom	48.3465
SRR3384912	fruit	no	18 week after full bloom	43.2506
SRR3384911	fruit	no	19 week after full bloom	53.4797
SRR3384910	fruit	no	20 week after full bloom	41.0771
SRR768128	whole fruit	no	25 days post anthesis	36.1791
SRR768129	whole fruit	no	35 days post anthesis	33.7331
SRR768130	whole fruit	no	60 days post anthesis	37.7044
SRR768131	whole fruit	no	87 days post anthesis	20.497
SRR7343308	immature fruit flesh	no	immature	22.6927
SRR7343309	immature fruit flesh	no	immature	31.8046
SRR6320494	ripe fruit flesh	no	mature	33.7805
SRR5405143	ripe fruit peel	no	mature	17.3726
SRR6320572	ripe fruit peel	no	mature	76.3274
SRR7403504	fruit	uninfected	mature	43.1744
SRR7403506	fruit	uninfected	mature	39.2669
SRR7403507	fruit	uninfected	mature	41.6039
SRR7403500	fruit	infected with penicillium expansum	mature	39.1913
SRR7403501	fruit	infected with penicillium expansum	mature	40.7921
SRR7403508	fruit	infected with penicillium expansum	mature	34.9386
SRR7403502	fruit	infected with penicillium expansum	mature	32.6403
SRR7403503	fruit	infected with penicillium expansum	mature	30.6738
SRR7403505	fruit	infected with penicillium expansum	mature	27.7981
SRR1613973	Central seeds	no	20DAPF	109.545
SRR1613974	Central seeds	no	20DAPF	91.912
SRR1613975	Central seeds	no	20DAPF	110.27
SRR1613976	Lateral seeds	no	20DAPF	85.4272
SRR1613977	Lateral seeds	no	20DAPF	127.263
SRR1613978	Lateral seeds	no	20DAPF	106.927
SRR3744786	stem	no	mature	54.1413
SRR3744787	stem	no	mature	55.3004
SRR3744772	stem	no	mature	49.6269
SRX765691	seedling shoot apex	no	4-6 week old seedling	16.5118
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	21.4101
SRR1089478	leaf	Virus-free	plantlets	14.4185
SRR1089477	leaf	ASGV-infected	plantlets	15.658
SRR767660	leaf	uninfected	fully developed	43.7522
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	86.7001
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	27.3083
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	103.714
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	71.8152
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	69.2608
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	36.195
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	38.6203
SRR6308182	young leaf	no	immature leaves	33.1245
SRR3744769	leaf	no	mature	55.8136
SRR3744770	leaf	no	mature	48.5055
SRR3744771	leaf	no	mature	51.6979
SRR5405145	leaf	no	mature	27.9156
SRR6320561	leaf	no	mature	43.7025