Gene detail

Detail information of MD13G1117300 Annotation

Gene ID	Annotation
MD13G1117300	Ribosomal protein L22p/L17e family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1117300	mRNA	Chr13	8575237	8576633	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0015934	large ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02880	large subunit ribosomal protein L17e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00237.15	Ribosomal_L22	5	131	1.10E-32

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	375.367
SRR5252888	dormant buds	no	dormant buds(0 month)	139.341
SRR5252889	dormant buds	no	dormant buds(0 month)	149.978
SRR5252886	dormant buds	no	dormant buds(1 months)	130.211
SRR5252887	dormant buds	no	dormant buds(1 months)	81.6276
SRR5252884	dormant buds	no	dormant buds(2 months)	140.431
SRR5252882	dormant buds	no	dormant buds(3 months)	156.142
SRR5252883	dormant buds	no	dormant buds(3 months)	171.244
SRR5252880	dormant buds	no	dormant buds(4 months)	190.107
SRR5252881	dormant buds	no	dormant buds(4 months)	206.695
SRR5252878	bud break	no	bud break	152.343
SRR5252879	bud break	no	bud break	246.716
SRR3744766	flower	no	mature	96.4422
SRR3744767	flower	no	mature	103.438
SRR3744768	flower	no	mature	102.923
SRR6308190	stigmas	no	open flowers	52.3977
SRR6308181	styles	no	open flowers	71.007
SRR6308188	filaments	no	open flowers	152.572
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	40.2327
SRR6308192	pollen	no	open flowers	45.9201
SRR6308191	petals	no	open flowers	143.667
SRR6308194	sepals	no	open flowers	83.3488
SRR6308193	receptacles	no	open flowers	142.948
SRR6308189	ovaries	no	open flowers	94.0963
SRR3384922	fruit	no	1 week after full bloom	208.795
SRR3384921	fruit	no	2 week after full bloom	181.099
SRR3384920	fruit	no	3 week after full bloom	171.439
SRR3384919	fruit	no	4 week after full bloom	134.109
SRR3384923	fruit	no	5 week after full bloom	99.0193
SRR3384918	fruit	no	6 week after full bloom	128.369
SRR3384917	fruit	no	8 week after full bloom	152.776
SRR3384916	fruit	no	10 week after full bloom	138.101
SRR3384915	fruit	no	12 week after full bloom	174.862
SRR3384914	fruit	no	14 week after full bloom	160.373
SRR3384913	fruit	no	16 week after full bloom	121.83
SRR3384912	fruit	no	18 week after full bloom	119.276
SRR3384911	fruit	no	19 week after full bloom	89.6801
SRR3384910	fruit	no	20 week after full bloom	82.9326
SRR768128	whole fruit	no	25 days post anthesis	143.949
SRR768129	whole fruit	no	35 days post anthesis	163.045
SRR768130	whole fruit	no	60 days post anthesis	111.843
SRR768131	whole fruit	no	87 days post anthesis	73.6621
SRR7343308	immature fruit flesh	no	immature	100.864
SRR7343309	immature fruit flesh	no	immature	105.646
SRR6320494	ripe fruit flesh	no	mature	94.1424
SRR5405143	ripe fruit peel	no	mature	213.34
SRR6320572	ripe fruit peel	no	mature	150.634
SRR7403504	fruit	uninfected	mature	111.485
SRR7403506	fruit	uninfected	mature	106.961
SRR7403507	fruit	uninfected	mature	106.955
SRR7403500	fruit	infected with penicillium expansum	mature	97.8471
SRR7403501	fruit	infected with penicillium expansum	mature	99.9523
SRR7403508	fruit	infected with penicillium expansum	mature	94.1461
SRR7403502	fruit	infected with penicillium expansum	mature	83.1642
SRR7403503	fruit	infected with penicillium expansum	mature	84.5083
SRR7403505	fruit	infected with penicillium expansum	mature	86.7001
SRR1613973	Central seeds	no	20DAPF	295.075
SRR1613974	Central seeds	no	20DAPF	272.517
SRR1613975	Central seeds	no	20DAPF	288.245
SRR1613976	Lateral seeds	no	20DAPF	245.499
SRR1613977	Lateral seeds	no	20DAPF	303.798
SRR1613978	Lateral seeds	no	20DAPF	266.49
SRR3744786	stem	no	mature	112.048
SRR3744787	stem	no	mature	113.099
SRR3744772	stem	no	mature	121.177
SRX765691	seedling shoot apex	no	4-6 week old seedling	183.373
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	186.8
SRR1089478	leaf	Virus-free	plantlets	95.2607
SRR1089477	leaf	ASGV-infected	plantlets	92.4157
SRR767660	leaf	uninfected	fully developed	131.824
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	104.377
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	165.95
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	161.312
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	32.226
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	97.3063
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	116.14
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	118.086
SRR6308182	young leaf	no	immature leaves	230.164
SRR3744769	leaf	no	mature	89.4916
SRR3744770	leaf	no	mature	86.7084
SRR3744771	leaf	no	mature	91.9438
SRR5405145	leaf	no	mature	59.379
SRR6320561	leaf	no	mature	72.9871