Gene detail

Detail information of MD13G1118600 Annotation

Gene ID	Annotation
MD13G1118600	SCP1-like small phosphatase 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1118600	mRNA	Chr13	8672897	8677369	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G226400.5.p	1	SCP1-like small phosphatase 5
Prunus persica	Prupe.1G226400.4.p	1	SCP1-like small phosphatase 5
Prunus persica	Prupe.1G226400.7.p	0.795	SCP1-like small phosphatase 5
Prunus persica	Prupe.1G226400.8.p	0.795	SCP1-like small phosphatase 5
Oryza sativa	LOC_Os01g47540.1	1	"NLI interacting factor-like phosphatase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0016791	phosphatase activity	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K17616	CTD small phosphatase-like protein 2	EC:3.1.3.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.89662
SRR5252888	dormant buds	no	dormant buds(0 month)	4.38609
SRR5252889	dormant buds	no	dormant buds(0 month)	6.66888
SRR5252886	dormant buds	no	dormant buds(1 months)	3.94659
SRR5252887	dormant buds	no	dormant buds(1 months)	5.05801
SRR5252884	dormant buds	no	dormant buds(2 months)	7.58511
SRR5252882	dormant buds	no	dormant buds(3 months)	6.32308
SRR5252883	dormant buds	no	dormant buds(3 months)	6.62092
SRR5252880	dormant buds	no	dormant buds(4 months)	6.21188
SRR5252881	dormant buds	no	dormant buds(4 months)	5.74577
SRR5252878	bud break	no	bud break	7.85678
SRR5252879	bud break	no	bud break	9.20238
SRR3744766	flower	no	mature	3.67025
SRR3744767	flower	no	mature	3.78726
SRR3744768	flower	no	mature	3.8925
SRR6308190	stigmas	no	open flowers	3.8519
SRR6308181	styles	no	open flowers	2.50221
SRR6308188	filaments	no	open flowers	2.03016
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.81028
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.99611
SRR6308194	sepals	no	open flowers	4.20541
SRR6308193	receptacles	no	open flowers	4.89675
SRR6308189	ovaries	no	open flowers	4.79778
SRR3384922	fruit	no	1 week after full bloom	3.97711
SRR3384921	fruit	no	2 week after full bloom	7.0081
SRR3384920	fruit	no	3 week after full bloom	5.59775
SRR3384919	fruit	no	4 week after full bloom	4.39781
SRR3384923	fruit	no	5 week after full bloom	3.25288
SRR3384918	fruit	no	6 week after full bloom	3.4918
SRR3384917	fruit	no	8 week after full bloom	2.73847
SRR3384916	fruit	no	10 week after full bloom	2.38514
SRR3384915	fruit	no	12 week after full bloom	1.62628
SRR3384914	fruit	no	14 week after full bloom	2.04116
SRR3384913	fruit	no	16 week after full bloom	1.63919
SRR3384912	fruit	no	18 week after full bloom	1.43574
SRR3384911	fruit	no	19 week after full bloom	1.03278
SRR3384910	fruit	no	20 week after full bloom	1.34773
SRR768128	whole fruit	no	25 days post anthesis	6.62729
SRR768129	whole fruit	no	35 days post anthesis	5.62649
SRR768130	whole fruit	no	60 days post anthesis	2.2558
SRR768131	whole fruit	no	87 days post anthesis	1.85232
SRR7343308	immature fruit flesh	no	immature	4.64357
SRR7343309	immature fruit flesh	no	immature	3.27036
SRR6320494	ripe fruit flesh	no	mature	2.35475
SRR5405143	ripe fruit peel	no	mature	0.914206
SRR6320572	ripe fruit peel	no	mature	0.227225
SRR7403504	fruit	uninfected	mature	1.59261
SRR7403506	fruit	uninfected	mature	1.19393
SRR7403507	fruit	uninfected	mature	0.869886
SRR7403500	fruit	infected with penicillium expansum	mature	1.9917
SRR7403501	fruit	infected with penicillium expansum	mature	1.8719
SRR7403508	fruit	infected with penicillium expansum	mature	1.56251
SRR7403502	fruit	infected with penicillium expansum	mature	1.31787
SRR7403503	fruit	infected with penicillium expansum	mature	2.08527
SRR7403505	fruit	infected with penicillium expansum	mature	1.59876
SRR1613973	Central seeds	no	20DAPF	8.50912
SRR1613974	Central seeds	no	20DAPF	8.56017
SRR1613975	Central seeds	no	20DAPF	6.89317
SRR1613976	Lateral seeds	no	20DAPF	7.31849
SRR1613977	Lateral seeds	no	20DAPF	8.05184
SRR1613978	Lateral seeds	no	20DAPF	7.51158
SRR3744786	stem	no	mature	3.60636
SRR3744787	stem	no	mature	3.46248
SRR3744772	stem	no	mature	3.68366
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.78511
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.89449
SRR1089478	leaf	Virus-free	plantlets	3.11412
SRR1089477	leaf	ASGV-infected	plantlets	2.89871
SRR767660	leaf	uninfected	fully developed	2.43709
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.22188
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.16597
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.93792
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.1435
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.99216
SRR6308182	young leaf	no	immature leaves	8.90169
SRR3744769	leaf	no	mature	4.16452
SRR3744770	leaf	no	mature	4.44768
SRR3744771	leaf	no	mature	4.93995
SRR5405145	leaf	no	mature	0.949903
SRR6320561	leaf	no	mature	4.66729