Gene detail

Detail information of MD13G1139200 Annotation

Gene ID	Annotation
MD13G1139200	hAT dimerisation domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1139200	mRNA	Chr13	10720823	10725344	-

Sequences

CDS:

MD13G1139200

TCGAGTCGAACCTATCCCACTCGCGACTCACGATTCCGAACGATCCCGGCTCGTTCTTCCTCCTTCCCCCAAATTTTTAATTTTTCCCACCAATCGGACCGTCAAAAACCCTAATTTTCCATCGATTTCCCCTCCTTCTTACGTATCAATCATCGCCAAATCCGGATTTCTCTCACCCAAATCCAAAAACTTTCAGATTCGTCGAAATTTCTGACCCAGGTTCCTATTTCCTGTTGCTTGACTGTGACTGCGGTAAACACCAACGTCCTCTTTTACTAGTGTCAATGGACCATGCAACATCGCATGATCAAAGATATTGACTTCTGTTAGTGCTGAGGATACAGTGTGTGAATCAGATAACGGTAGTTTCTTGAATAAATTCTTAAATGGATTGAATTGGTAGCTACAATGCGCTCATCTGGACTTGTTGACCCTGGATGGGACCATGGCGTTGCTCAAGATGAGAGGAAGAAAAAGGTTAAATGCAATTACTGTGGAAAAATAGTTAGTGGTGGAATATACAGATTGAAGCAACATTTAGCCCGAGTTTCTGGAGAAGTTACTTATTGTGATAAAGCTCCAGACGATGTATACTTTCGTATGAAAGAAAATATGAAAGGAAGTCGTTCTCATAAGAAACCTAGGCTTTCCGAAGATATTGGCCAAGCATATCTGAATTTCCAATCCAACGATGACGAAGAAGATGTGCATGTTGGTTATAGAAGCAAAGGAAAGCAGTTGGTGGGTGAGAGGAATTTAGCTATGAAATTGACTCCTCTTCGGTCGTTAGGGTATGTTGATCCTGGGTGGGAACATGGCGTTGCTCAGGATGAGAAAAAGAAAAAGGTGAAATGCAATTATTGCGAGAAAATAGTTAGTGGTGGTATCAATCGGTTTAAACAACATTTAGCTAGAATTCCTGGAGAAGTAGCACCTTGTAAACATGCTCCTGATGATGTCTATGTTAAAATAAAGGAGAATATGAAATGGCATCGTACTGGAAGGAGACAGAGACAACCCGATTCCAAGGACATATCAAATTTTGATCCTCTGTCAGATAATGAAGGCCAAGACGATGACCAAATGGAAGCTGTTCTGCCACATATGAGCCAGGAAAGCTTCATCGATGGTGATAGGAGATTGGGCCAAAATTTGAGACATACATTCTTGTCGCTGCCTCCCAGCACTGGTTCTGAACCATTATTTAAAAGATCAAGGCTCGATTCTCTGTTCTTGACATCTCCTAAGAGTTTTCCACCACAATCTTACAAGCAAGCAAGGGTCAGAACAATGTCAAATAAAATTTCCCACAAGGAAGTTATTTCCGGAATTTGCAAATTCTTTTACCATGCAGGAGTTCCTATACAAGCAGCAGACTCCCTATACTTTCATAAGATGCTGGAATTGGTTGGCCAATATGGGCAGGGTATGGTTGCACCTCCAAGCCAAATAATAACCGGTCGGTTTCTACAAGAGGAAATTGCAACCATTAGAAACTACCTGGCTGAGTATAAGGCATCATGGGCAACCACTGGCTGTTCTATTATGGCCGACAGTTGGAGAGACACAGAGGGTAGAATATTGATAAACTTGTTGGCTTCCGGTCCAAATGGTGTGTACTTTGTTTCTTCAGTTGATGCCACTGAAATTGTTGAAGATGCTTTGAATTTGTTTATGTTGCTGGACAAAGTGGTTGAAGAGATGGGGGAGGAAAATGTAGTTCAGGTAATCACTCCAAATACTCCTAGTTATAAGGCTGCTGGAAAGATGCTTGAGGAGAAGAGAAAGAATTTATTCTGGACCCCATGCGCCACCAGTTGTATCGATCAAACGCTTGAAGATTTTTTGAGGATAAGATGCGTAGCGGAGTGCATGGAGAAGGGCCAAAAAGTTACAAAGCTCATTTACAACCAAGTTTGGTTGTTAAATTTTATGAAGAGTGATTTCACACAGGGGAAGGAACTTTTGAGATCGTCTATCACCCGGTTTGCTTCTAGCTTTGCTACCTTACAAAGCTTGCTGGACCACAAGACTGGTCTTAAAAGAATGTTTCAATCAAACAAATGGATTTCATCTCAGTGCTCCAAATCATTTGAGGGAAAAGAAGTGGAAAATATTGTCTTAAATGCTGCATTTTGGAAGAAGTTACAGTTTGTTAGGAATTCAGTGGACCCGATAATGCAAATTCTTCAAAAGGTTGAGAATGGTGACCACTTGTCAATGTCATCTATATATAATGACATGTACAGGGCAAAGATTGCAATAAAAACCATTCATGTCCGTAAATATGAACCATTTTGGAGCGTTATAGAGAGTCATTGGAACTCACTGTTCTACCACCCTGTATACGTAGCTGCTTACTACTTAAATCCATCATACAGATATCGACCTGATTTTACGGCGCATACTGAGGTGATGCGTGGACTTAACGAATGCATTGTTCGGCTGGAGCCAGACCATTCAAATAGGATTTCTGCATCTATGCAGATTTCTGATTACAATTCTGCTAAAGCTGATTTTGGAACTGAATTGGCAATCAGTACAAGAACAGAGCTTGATCCAGCTGCATGGTGGCAACAACATGGGATAAGTTGCTTAGAGCTGCAGCGTATAGCTGTGCGTATATTGAGTCAGACATGCTCTTCTTTTGGGTGTGAGCATAACTGGAGTATATACGATCAATTGTACAATCCGAGAAGTAATCGTTTGGCCCAAAAAAGGTTAAACGACCTCATCTACGTTCATTACAATTTGCGTCTTAGAGAACAAAAATTACGAAGAAGGCCGGAAAATTCAACCTCCCTTGACAATGTGCTGTTAGAGCGGTTGCTAGATGATTGGATTGTAGATGCTGCGGAAAATGACTTGCTAGACAATGAGGAAGTCCTTTACAACGAAATCGAACAGGTTGATGAATACGAAAATGATCTCGTTGATTACGAATGTGGAATTGCAAACGGAGAGACTAGGAACGGATCCATTGAGCTGGTAACCTTGGCTGATGCAGATGTCAATCCGGCCAATGCTGGCGTTGCCACCGATGATGATGACGAGGAGGAGGAGGGGGCGGAAGGTGAGATGAACTTTTTCCATGATGACTTGAGTGATTAGCAAGTTGTAGACCTTCAACTAACAAAGATGCAATGGTGGTGAGGAAGCTCTGCCTTAGTGGTGTAATATATTCCAGCTTACTTGTTTTGCAAGTTACCTATGGAAGTAAAACAGGGCGTCCTTACATGTAATATTCTTCAACCTTTTTGCTCAAATGTTACTAACTCAACCGCTTTTTGAATCTCCAAAGCATT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G17450.1	1	hAT dimerisation domain-containing protein
Prunus persica	Prupe.1G105600.2.p	1	hAT dimerisation domain-containing protein
Prunus persica	Prupe.1G105600.3.p	1	hAT dimerisation domain-containing protein
Prunus persica	Prupe.1G105600.1.p	1	hAT dimerisation domain-containing protein
Pyrus communis	PCP033120.1	1	-
Rubus occidentalis	Ro04_G36352	1	-
Fragaria vesca	mrna22812.1	1	hAT dimerisation domain-containing protein
Vitis vinifera	GSVIVT01017686001	1	hAT dimerisation domain-containing protein
Populus trichocarpa	Potri.002G188400.1	1	hAT dimerisation domain-containing protein
Populus trichocarpa	Potri.014G114100.1	1	hAT dimerisation domain-containing protein
Nicotiana benthamiana	Niben101Scf05025g10008.1	1	"DNA binding protein, putative [Ricinus communis] gb\|EEF43186.1\| DNA binding protein, putative [Ricinus communis]"

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0046983	protein dimerization activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02892.11	zf-BED	9	46	3.20E-08
PF02892.11	zf-BED	132	169	7.60E-09
PF05699.10	Dimer_Tnp_hAT	712	782	3.90E-12

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.1289
SRR5252888	dormant buds	no	dormant buds(0 month)	3.43725
SRR5252889	dormant buds	no	dormant buds(0 month)	3.53944
SRR5252886	dormant buds	no	dormant buds(1 months)	4.36634
SRR5252887	dormant buds	no	dormant buds(1 months)	2.77145
SRR5252884	dormant buds	no	dormant buds(2 months)	4.52893
SRR5252882	dormant buds	no	dormant buds(3 months)	4.49066
SRR5252883	dormant buds	no	dormant buds(3 months)	3.79655
SRR5252880	dormant buds	no	dormant buds(4 months)	2.93629
SRR5252881	dormant buds	no	dormant buds(4 months)	3.34493
SRR5252878	bud break	no	bud break	5.13094
SRR5252879	bud break	no	bud break	5.60431
SRR3744766	flower	no	mature	3.24658
SRR3744767	flower	no	mature	2.82508
SRR3744768	flower	no	mature	3.10297
SRR6308190	stigmas	no	open flowers	2.31714
SRR6308181	styles	no	open flowers	1.96029
SRR6308188	filaments	no	open flowers	0.854085
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.81591
SRR6308192	pollen	no	open flowers	4.38148
SRR6308191	petals	no	open flowers	2.19405
SRR6308194	sepals	no	open flowers	1.063
SRR6308193	receptacles	no	open flowers	1.55443
SRR6308189	ovaries	no	open flowers	1.4364
SRR3384922	fruit	no	1 week after full bloom	0.724762
SRR3384921	fruit	no	2 week after full bloom	0.627608
SRR3384920	fruit	no	3 week after full bloom	0.967085
SRR3384919	fruit	no	4 week after full bloom	0.616901
SRR3384923	fruit	no	5 week after full bloom	0.647358
SRR3384918	fruit	no	6 week after full bloom	0.698123
SRR3384917	fruit	no	8 week after full bloom	0.552725
SRR3384916	fruit	no	10 week after full bloom	1.0137
SRR3384915	fruit	no	12 week after full bloom	0.799597
SRR3384914	fruit	no	14 week after full bloom	0.896665
SRR3384913	fruit	no	16 week after full bloom	0.74214
SRR3384912	fruit	no	18 week after full bloom	0.830394
SRR3384911	fruit	no	19 week after full bloom	0.924905
SRR3384910	fruit	no	20 week after full bloom	0.804638
SRR768128	whole fruit	no	25 days post anthesis	2.21514
SRR768129	whole fruit	no	35 days post anthesis	0.736167
SRR768130	whole fruit	no	60 days post anthesis	0.697622
SRR768131	whole fruit	no	87 days post anthesis	1.53492
SRR7343308	immature fruit flesh	no	immature	1.85372
SRR7343309	immature fruit flesh	no	immature	2.70173
SRR6320494	ripe fruit flesh	no	mature	2.05798
SRR5405143	ripe fruit peel	no	mature	2.14231
SRR6320572	ripe fruit peel	no	mature	1.19772
SRR7403504	fruit	uninfected	mature	1.53178
SRR7403506	fruit	uninfected	mature	1.57552
SRR7403507	fruit	uninfected	mature	1.41564
SRR7403500	fruit	infected with penicillium expansum	mature	4.06315
SRR7403501	fruit	infected with penicillium expansum	mature	4.22589
SRR7403508	fruit	infected with penicillium expansum	mature	4.64392
SRR7403502	fruit	infected with penicillium expansum	mature	3.5617
SRR7403503	fruit	infected with penicillium expansum	mature	4.42728
SRR7403505	fruit	infected with penicillium expansum	mature	3.6047
SRR1613973	Central seeds	no	20DAPF	0.897592
SRR1613974	Central seeds	no	20DAPF	1.14382
SRR1613975	Central seeds	no	20DAPF	1.10729
SRR1613976	Lateral seeds	no	20DAPF	0.862893
SRR1613977	Lateral seeds	no	20DAPF	0.918868
SRR1613978	Lateral seeds	no	20DAPF	1.14177
SRR3744786	stem	no	mature	3.17507
SRR3744787	stem	no	mature	3.26962
SRR3744772	stem	no	mature	3.36948
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.32993
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.76456
SRR1089478	leaf	Virus-free	plantlets	2.70436
SRR1089477	leaf	ASGV-infected	plantlets	2.74877
SRR767660	leaf	uninfected	fully developed	0.425913
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.55123
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.75412
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.29678
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.00665
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.7495
SRR6308182	young leaf	no	immature leaves	2.70089
SRR3744769	leaf	no	mature	4.18504
SRR3744770	leaf	no	mature	3.76154
SRR3744771	leaf	no	mature	3.87243
SRR5405145	leaf	no	mature	2.23587
SRR6320561	leaf	no	mature	1.77791