Gene detail

Detail information of MD13G1144300 Annotation

Gene ID	Annotation
MD13G1144300	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0292	SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C calmodulin-binding transcription activator CHB CAMTA SWI/SNF complex

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1144300	mRNA	Chr13	11215719	11223702	+

Sequences

CDS:

MD13G1144300

TCTCTCTCTCTCTCTCTGTCTCATGAAATCTAGGGTTTATGCGAGCTCGTCATGGCTGATACCAGGAGATACGCCCCCAATCAGCATCTAGACCTTGCCCAGATATTGCAAGAAGCAAAGAACCGTTGGCTTCGTCCAGCTGAAATTTGTGAAATACTTCGCAACTATCGGCATTTTGAATTGACCACAGATCCGCCCGTCAGGCCTCCAGCTGGTTCTTTGTACCTGTTTGATCGAAAAGCACTTCGATATTTTCGTAAAGATGGTCATCGCTGGAGGAAGAAAAAGGATGGAAAGACAGTAAAAGAAGCCCATGAAAAGTTGAAGGCTGGCAGTGTAGACGTACTTCATTGTTACTATGCCCATGGGGAGGACAATGCAAATTTTCAACGGCGGAGTTATTGGATGCTTGACACGCATTTACAGCACATTGTTCTTGTGCATTACAGAAATGTGGAAGAGGCAAACTCAGCTGCCCGTATGGTTCAAACATCCTTTGGTTCAAGTCCACTTCAAACATCCTTTGCTTCAAGTCCAGTTCATACATCCTTTGCTTCAAGTCCAAACAGAGTTGAATTGGGTGGACAAACATTATCGAAAGAATTTGAGGATGTGGATTCTCGGAGAGATGCAGGAACTTCATCTGTTGAGCAACCGATGTTTGGTTCCTTTTCTCATAATGCTTCTTTGCTTCCTCAACAAGTTGGAGGATTTCCTGAGTCATTCAGGGATCCCTCTAGTACATGGTATGGTGGACCTAAATTTGATCATGGTGCTGGATTATCTGCCTGGCAAGGAATGGATAGCTCAATGAGAAATGAGCACATCATGCATGGCCAAAACCTTTTTGTTGAAGAACCTAACAGAGCTGACTTTATAACTCTTAAGCTAACAGATGCTAAAGTGGATGCTCATAGTGGAGTCAAAGATGTAACTTGTGAAGATAGGTTGACCACTAACATAGATGTCCAAATTGTCTCAGCACCTTCTCAAAGAGAAGATCAGGTGCCAAAGGAGCATGACTTCAATGTGCTTCATCCTCAGGTTCAAGATTATTCTGATCCTCAGATTGTAGTAACTCCTTCCAACCAAGTTGAAGAGAATAGAGATTGTCGTGTGCGTAATGAACCAGTGGAACTGAAGAAACTAGACAGCTTTGGGAGATGGATGGATAAAGAAATTGGTGTGGATTGTGATGATTCCTTGATGGCTTCCGACTCTGGTAATTACTGGAGTACATTTGATGCTGAGAGTGGTGATAAGGAAGTGTCCAGTTTATCACACCATATGCAGTTGGATATAGAGTCACTGGGTCCTTCTCTTTCCCAAGAACAACTATTTACTATTTCTGATTTTTCACCAGATTGGGCTTATTCAGGAACTGAAACAAAGGTTTTAATAGTTGGCAGTTTTCTTGGAAGCAAGAAGGATTGTGCTGAGACTAACTGGGGGTGCATGTTTGGTGAAATAGAAGTTTCTGCTGAAATTCTATCTAACAATGCCATTAGATGTCAAACTCCTCTGCATGCTCCTGGGCGTGTTCCATTCTATGTGACCTGCAGAAATAGGTTAGCCTGCAGTGAAATTAGGGAGTTTGAATACCGTGAAAAACCCATTGGAATAGCCATCAACAGGTTAAGAGATGATGAATTACGCTTTCAGATACGACTAGCAAAATTGTTGAGCTTGGGCTCAGAGAGGAAGTGGTTGATATGTGCTGTTCCAGATTGTGATCAATGCAAGCTCAAAAGTTCCATATTTTCAATGAGAAGCAACAGTGAAAGTGATTGGGAAACAATTGATGGGGCTTCTGTGGCATGCGAAAGTGACCACTTGAGCCGTAGGGATGTCTTGATTCAGAATTTGTTGAAGGATAGACTCTGTGAATGGCTAGTATGTAAAATTCACGAAGGAGGCAAAGGAACACATGTTCTGGATAATGAAGGCCAAGGTGTTCTACATTTGACAGGTGCTCTTGGTTACGAGTGGGCCATAGGTCCCATAATTGCTGCAGGTGTCAGTCCCAATTTCAGAGATGCTCACGGAAGAACAGGGCTTCACTGGGCATCATATTTTGGAAGAGAGGAAACTGTCATTGCGTTACTTCGATTGGGTGCCGCTCCAGGAGCCGTCGAGGACCCAACATCTGTGTTTCCTGGCGGACAAACTGCTGCTGATCTAGCCTCGAGTAGAGGGCATAAAGGGATTGCTGGATATTTGGCAGAAGTGGATTTAACCAGTCACCTGGAGTTGTTGACCATGAATGAGAATAGAATGAACAATGTTACAGCAACTATTGCAGCTGAGAAGGCCAAACAGACAGCAGAAGTTTCTGCATCTGATGTTGCAGTAGATGAGCAACATTTTCTCAAAAACCCTATAGCAGCTGTTAGGAAATCAGCTCATGCGGCTGCTCTAATTCAGGAGGCTTTCAGGGCTCGTTCATTTCGTCAGAGACAGTTAACCAAGAGCAGAACAGATATTTCTGAAGTTCAGTCTCAGGACCTTGTTGCACGTCGTTCCTTGAAGAGAGTCCAGAAGTTCGCTCACTATGAGGATTATCTGCATGTCGCAGCAGCTCTGAAGATCCAACAAAACTATCGTGGATGGAAGGGAAGAAAGGATTATCTGAAGATTCGTGACCGTATTGTTAAAATTCAGGCTCATGTGAGGGGACATCAGGTTCGGAAGAATTACAAAAAGGTTTTGTGGTCTGTTGGTATACTTGAAAAGGTTATACTGCGTTGGAGGCGAAAGGGAACTGGTTTGCGAGGATTTCGGGTGGAAGGGCCTACTGAAGATGCATCTTCAGAGGTTAAGAAAAATGATGACTATGAATTTCTTAGTGTCGGTCGGAAGCAGAAATTTGCTGGGGTTGAGAAAGCTCTCGCAAGGGTAAAGTCCATGGCTCGTCAGCCTGAAGCGCGTGAACAATACATGAGGCTACTTTCAAACTTTGAGAAACTTGAGATGGCGGACGGGGAGAACCAGGCCTCGAATCAAAATGAAAGTTCCGACGAAAAAGTTATAGATGAAGTTCTGCGTGCACTCAATGAAGGTCAATGATCAACTTCCACCATGTCAAGTAATTGAATGGAGTAAACCAAAGGCTGTATGGCACTATTTTTGTCGCCCTACCCGTAATATTTTCGCCTGTATTTAACGGCCGTCGTGGTTTTTTTACCGGGGAAATTTTGTCAATTGCAGGAAGGATGGGAGAAATGGGAAAAAGCATAATTGTATATGGCACAGATTTCCTTTTTCCTTGCTTAACCAGTAGTCAAGTTTGATCTGACCTAGTTTTCTAGGGTTTTTATGAAACGTGGGCAGCTGATGGTCAAAATTTCAGAGTAGTTGACAGGTTTAAAGTTTACCAATGGTGCTATATTTTACAGTTACCATGGGTTTGTTTTCCATAAATTATCGTAAAATTACAACCCATTTGGTGCCGTATAGTTTACACTAATTAAT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	CAMTA

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G108700.5.p	1	signal responsive 1
Prunus persica	Prupe.1G108700.2.p	1	signal responsive 1
Prunus persica	Prupe.1G108700.3.p	1	signal responsive 1
Prunus persica	Prupe.1G108700.1.p	0.974	signal responsive 1
Prunus persica	Prupe.1G108700.4.p	0.739	signal responsive 1
Pyrus communis	PCP028830.1	1	-
Pyrus x bretschneideri	Pbr014973.1	1	-
Rosa multiflora	Rmu_sc0029995.1_g000002.1	1	-
Rubus occidentalis	Ro04_G19324	1	-
Fragaria vesca	mrna29100.1	1	signal responsive 1
Vitis vinifera	GSVIVT01017670001	1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Solanum lycopersicum	Solyc01g057270.2.1	1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Populus trichocarpa	Potri.010G153100.3	1	signal responsive 1
Nicotiana benthamiana	Niben101Scf23901g00005.1	1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains LENGTH=1050

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
K21596	calmodulin-binding transcription activator	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03859.12	CG-1	21	135	1.60E-48
PF01833.20	TIG	431	517	1.40E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.99785
SRR5252888	dormant buds	no	dormant buds(0 month)	8.29105
SRR5252889	dormant buds	no	dormant buds(0 month)	8.24012
SRR5252886	dormant buds	no	dormant buds(1 months)	12.3163
SRR5252887	dormant buds	no	dormant buds(1 months)	11.5912
SRR5252884	dormant buds	no	dormant buds(2 months)	10.208
SRR5252882	dormant buds	no	dormant buds(3 months)	11.7076
SRR5252883	dormant buds	no	dormant buds(3 months)	11.6098
SRR5252880	dormant buds	no	dormant buds(4 months)	8.89765
SRR5252881	dormant buds	no	dormant buds(4 months)	8.4109
SRR5252878	bud break	no	bud break	8.18061
SRR5252879	bud break	no	bud break	5.96661
SRR3744766	flower	no	mature	8.1549
SRR3744767	flower	no	mature	9.04671
SRR3744768	flower	no	mature	8.51786
SRR6308190	stigmas	no	open flowers	6.75699
SRR6308181	styles	no	open flowers	6.83599
SRR6308188	filaments	no	open flowers	3.85153
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.49284
SRR6308192	pollen	no	open flowers	22.8772
SRR6308191	petals	no	open flowers	10.329
SRR6308194	sepals	no	open flowers	8.87315
SRR6308193	receptacles	no	open flowers	3.5555
SRR6308189	ovaries	no	open flowers	5.91906
SRR3384922	fruit	no	1 week after full bloom	7.19915
SRR3384921	fruit	no	2 week after full bloom	11.8627
SRR3384920	fruit	no	3 week after full bloom	5.13524
SRR3384919	fruit	no	4 week after full bloom	3.47235
SRR3384923	fruit	no	5 week after full bloom	2.55343
SRR3384918	fruit	no	6 week after full bloom	2.86386
SRR3384917	fruit	no	8 week after full bloom	2.15991
SRR3384916	fruit	no	10 week after full bloom	2.44514
SRR3384915	fruit	no	12 week after full bloom	1.92081
SRR3384914	fruit	no	14 week after full bloom	2.32288
SRR3384913	fruit	no	16 week after full bloom	2.73597
SRR3384912	fruit	no	18 week after full bloom	1.98287
SRR3384911	fruit	no	19 week after full bloom	2.26754
SRR3384910	fruit	no	20 week after full bloom	2.67268
SRR768128	whole fruit	no	25 days post anthesis	3.78992
SRR768129	whole fruit	no	35 days post anthesis	2.61257
SRR768130	whole fruit	no	60 days post anthesis	2.49571
SRR768131	whole fruit	no	87 days post anthesis	3.37371
SRR7343308	immature fruit flesh	no	immature	5.14214
SRR7343309	immature fruit flesh	no	immature	4.72286
SRR6320494	ripe fruit flesh	no	mature	4.68837
SRR5405143	ripe fruit peel	no	mature	4.51721
SRR6320572	ripe fruit peel	no	mature	4.43521
SRR7403504	fruit	uninfected	mature	3.86406
SRR7403506	fruit	uninfected	mature	4.25694
SRR7403507	fruit	uninfected	mature	4.07871
SRR7403500	fruit	infected with penicillium expansum	mature	1.51616
SRR7403501	fruit	infected with penicillium expansum	mature	1.90756
SRR7403508	fruit	infected with penicillium expansum	mature	1.65723
SRR7403502	fruit	infected with penicillium expansum	mature	1.99007
SRR7403503	fruit	infected with penicillium expansum	mature	2.1923
SRR7403505	fruit	infected with penicillium expansum	mature	1.50533
SRR1613973	Central seeds	no	20DAPF	4.17747
SRR1613974	Central seeds	no	20DAPF	4.68739
SRR1613975	Central seeds	no	20DAPF	3.60811
SRR1613976	Lateral seeds	no	20DAPF	5.13675
SRR1613977	Lateral seeds	no	20DAPF	4.41174
SRR1613978	Lateral seeds	no	20DAPF	4.82002
SRR3744786	stem	no	mature	13.2768
SRR3744787	stem	no	mature	12.5806
SRR3744772	stem	no	mature	12.5275
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.32774
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.52422
SRR1089478	leaf	Virus-free	plantlets	11.1972
SRR1089477	leaf	ASGV-infected	plantlets	6.93473
SRR767660	leaf	uninfected	fully developed	1.88665
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.13742
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.84097
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.69323
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.7306
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.09223
SRR6308182	young leaf	no	immature leaves	4.22706
SRR3744769	leaf	no	mature	8.39916
SRR3744770	leaf	no	mature	8.51111
SRR3744771	leaf	no	mature	9.45654
SRR5405145	leaf	no	mature	8.33101
SRR6320561	leaf	no	mature	5.23807