Gene detail

Detail information of MD13G1150600 Annotation

Gene ID	Annotation
MD13G1150600	Peroxidase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1150600	mRNA	Chr13	11797366	11798748	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G16270.1	1	Peroxidase superfamily protein
Prunus persica	Prupe.1G114700.1.p	1	Peroxidase superfamily protein
Pyrus communis	PCP028860.1	1	-
Pyrus x bretschneideri	Pbr015016.1	1	-
Rosa multiflora	Rmu_sc0007063.1_g000002.1	1	-
Rubus occidentalis	Ro04_G19916	1	-
Fragaria vesca	mrna05067.1	1	Peroxidase superfamily protein
Vitis vinifera	GSVIVT01034967001	1	Peroxidase superfamily protein
Populus trichocarpa	Potri.008G103200.1	1	Peroxidase superfamily protein
Nicotiana benthamiana	Niben101Scf10997g03005.1	1	Peroxidase 40
Oryza sativa	LOC_Os08g20730.1	1	"peroxidase precursor, putative, expressed"
Zea mays	GRMZM2G033985_P01	1	Peroxidase superfamily protein

Gene Ontology

GO term	Description	Category
GO:0020037	heme binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0006979	response to oxidative stress	biological_process
GO:0004601	peroxidase activity	molecular_function

KEGG

KO	Description	Enzyme
K00430	peroxidase	EC:1.11.1.7

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0877736
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.511917
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.35796
SRR5252884	dormant buds	no	dormant buds(2 months)	0.571662
SRR5252882	dormant buds	no	dormant buds(3 months)	0.382231
SRR5252883	dormant buds	no	dormant buds(3 months)	0.416505
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.211707
SRR5252878	bud break	no	bud break	0.189977
SRR5252879	bud break	no	bud break	0.105332
SRR3744766	flower	no	mature	0.121733
SRR3744767	flower	no	mature	0.106865
SRR3744768	flower	no	mature	0.144345
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.25551
SRR6308189	ovaries	no	open flowers	0.103739
SRR3384922	fruit	no	1 week after full bloom	4.02626
SRR3384921	fruit	no	2 week after full bloom	6.29514
SRR3384920	fruit	no	3 week after full bloom	0.341106
SRR3384919	fruit	no	4 week after full bloom	0.157566
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0.211425
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	16.3194
SRR768129	whole fruit	no	35 days post anthesis	41.0299
SRR768130	whole fruit	no	60 days post anthesis	1.77906
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.529207
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.105966
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	154.816
SRR1613974	Central seeds	no	20DAPF	156.624
SRR1613975	Central seeds	no	20DAPF	162.541
SRR1613976	Lateral seeds	no	20DAPF	217.872
SRR1613977	Lateral seeds	no	20DAPF	205.68
SRR1613978	Lateral seeds	no	20DAPF	180.82
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.0413444
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0523071
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.224796
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.221162
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.0450528
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0