Gene detail

Detail information of MD13G1172200 Annotation

Gene ID	Annotation
MD13G1172200	Glutaredoxin family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0084	nicotianamine synthase activity nicotianamine biosynthetic process phloem transport nicotianamine synthase [EC:2.5.1.43] prolyl oligopeptidase [EC:3.4.21.26] oxygen transporter activity protein disulfide oxidoreductase activity serine-type exopeptidase activity arsenate reductase (glutaredoxin) activity oxygen transport cell redox homeostasis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1172200	mRNA	Chr13	14101048	14101356	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G21460.1	1	Glutaredoxin family protein
Prunus persica	Prupe.1G140500.1.p	1	Glutaredoxin family protein
Pyrus communis	PCP041317.1	1	-
Pyrus x bretschneideri	Pbr014824.1	1	-
Rosa multiflora	Rmu_sc0003052.1_g000007.1	1	-
Rubus occidentalis	Ro04_G06401	1	-
Vitis vinifera	GSVIVT01017787001	1	Glutaredoxin family protein
Solanum lycopersicum	Solyc01g067440.2.1	1	Glutaredoxin family protein
Populus trichocarpa	Potri.008G214500.1	1	Glutaredoxin family protein
Nicotiana benthamiana	Niben101Scf00082g03004.1	1	Glutaredoxin-C1
Nicotiana benthamiana	Niben101Scf02752g06006.1	0.933	Glutaredoxin-C1

Gene Ontology

GO term	Description	Category
GO:0045454	cell redox homeostasis	biological_process
GO:0009055	electron carrier activity	molecular_function
GO:0015035	protein disulfide oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00462.20	Glutaredoxin	13	75	6.50E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.56063
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	1.8796
SRR3744767	flower	no	mature	4.41747
SRR3744768	flower	no	mature	5.37191
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	2.21769
SRR6308193	receptacles	no	open flowers	1.75088
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0
SRR3384921	fruit	no	2 week after full bloom	1.65441
SRR3384920	fruit	no	3 week after full bloom	2.91347
SRR3384919	fruit	no	4 week after full bloom	2.01871
SRR3384923	fruit	no	5 week after full bloom	1.27985
SRR3384918	fruit	no	6 week after full bloom	0.712369
SRR3384917	fruit	no	8 week after full bloom	3.08543
SRR3384916	fruit	no	10 week after full bloom	1.33608
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	2.54528
SRR768128	whole fruit	no	25 days post anthesis	0.870057
SRR768129	whole fruit	no	35 days post anthesis	1.9109
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	1.20577
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	2.58339
SRR7403507	fruit	uninfected	mature	0.511223
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.207849
SRR1613974	Central seeds	no	20DAPF	0.142797
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0.362259
SRR3744786	stem	no	mature	8.25419
SRR3744787	stem	no	mature	8.21257
SRR3744772	stem	no	mature	7.24414
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.241058
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.254
SRR1089478	leaf	Virus-free	plantlets	9.36115
SRR1089477	leaf	ASGV-infected	plantlets	4.14934
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.56998
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.03256
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.44319
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.14287
SRR6308182	young leaf	no	immature leaves	0.73164
SRR3744769	leaf	no	mature	3.7595
SRR3744770	leaf	no	mature	6.1622
SRR3744771	leaf	no	mature	2.32401
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0