Gene detail

Detail information of MD13G1185200 Annotation

Gene ID	Annotation
MD13G1185200	nuclear factor Y

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1185200	mRNA	Chr13	15766106	15768771	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	NF-YC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G152500.5.p	1	"nuclear factor Y, subunit C9"
Prunus persica	Prupe.1G152500.2.p	1	"nuclear factor Y, subunit C9"
Prunus persica	Prupe.1G152500.4.p	1	"nuclear factor Y, subunit C9"
Prunus persica	Prupe.1G152500.6.p	1	"nuclear factor Y, subunit C9"
Prunus persica	Prupe.1G152500.3.p	1	"nuclear factor Y, subunit C9"
Prunus persica	Prupe.1G152500.1.p	1	"nuclear factor Y, subunit C9"
Pyrus communis	PCP018040.1	1	-
Pyrus x bretschneideri	Pbr003581.1	1	-
Rosa multiflora	Rmu_sc0004911.1_g000014.1	1	-
Rosa multiflora	Rmu_sc0007543.1_g000006.1	1	-
Rubus occidentalis	Ro04_G16582	1	-
Fragaria vesca	mrna05925.1	1	"nuclear factor Y, subunit C9"
Populus trichocarpa	Potri.019G047000.1	1	"nuclear factor Y, subunit C9"
Oryza sativa	LOC_Os10g11580.1	1	"histone-like transcription factor and archaeal histone, putative, expressed"
Oryza sativa	LOC_Os09g30310.1	1	"core histone H2A/H2B/H3/H4, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	molecular_function
GO:0016602	CCAAT-binding factor complex	cellular component
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0046982	protein heterodimerization activity	molecular_function

KEGG

KO	Description	Enzyme
K08066	"nuclear transcription factor Y, gamma"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00808.19	CBFD_NFYB_HMF	92	155	2.00E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.47524
SRR5252888	dormant buds	no	dormant buds(0 month)	38.9285
SRR5252889	dormant buds	no	dormant buds(0 month)	40.0583
SRR5252886	dormant buds	no	dormant buds(1 months)	30.2502
SRR5252887	dormant buds	no	dormant buds(1 months)	31.9575
SRR5252884	dormant buds	no	dormant buds(2 months)	44.5798
SRR5252882	dormant buds	no	dormant buds(3 months)	36.6939
SRR5252883	dormant buds	no	dormant buds(3 months)	59.3044
SRR5252880	dormant buds	no	dormant buds(4 months)	31.697
SRR5252881	dormant buds	no	dormant buds(4 months)	28.7778
SRR5252878	bud break	no	bud break	14.5595
SRR5252879	bud break	no	bud break	10.2818
SRR3744766	flower	no	mature	9.88281
SRR3744767	flower	no	mature	10.0877
SRR3744768	flower	no	mature	11.6197
SRR6308190	stigmas	no	open flowers	12.7691
SRR6308181	styles	no	open flowers	14.312
SRR6308188	filaments	no	open flowers	7.54578
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.13306
SRR6308192	pollen	no	open flowers	1.84649
SRR6308191	petals	no	open flowers	9.92835
SRR6308194	sepals	no	open flowers	15.7357
SRR6308193	receptacles	no	open flowers	16.5924
SRR6308189	ovaries	no	open flowers	22.0708
SRR3384922	fruit	no	1 week after full bloom	30.3131
SRR3384921	fruit	no	2 week after full bloom	12.4998
SRR3384920	fruit	no	3 week after full bloom	0.756685
SRR3384919	fruit	no	4 week after full bloom	8.57944
SRR3384923	fruit	no	5 week after full bloom	45.8111
SRR3384918	fruit	no	6 week after full bloom	7.13154
SRR3384917	fruit	no	8 week after full bloom	9.13051
SRR3384916	fruit	no	10 week after full bloom	4.6688
SRR3384915	fruit	no	12 week after full bloom	15.3032
SRR3384914	fruit	no	14 week after full bloom	4.92317
SRR3384913	fruit	no	16 week after full bloom	21.1481
SRR3384912	fruit	no	18 week after full bloom	10.3233
SRR3384911	fruit	no	19 week after full bloom	63.3989
SRR3384910	fruit	no	20 week after full bloom	20.1924
SRR768128	whole fruit	no	25 days post anthesis	3.1223
SRR768129	whole fruit	no	35 days post anthesis	9.3338
SRR768130	whole fruit	no	60 days post anthesis	9.90039
SRR768131	whole fruit	no	87 days post anthesis	15.2648
SRR7343308	immature fruit flesh	no	immature	36.6923
SRR7343309	immature fruit flesh	no	immature	38.3348
SRR6320494	ripe fruit flesh	no	mature	18.7005
SRR5405143	ripe fruit peel	no	mature	7.63801
SRR6320572	ripe fruit peel	no	mature	7.72085
SRR7403504	fruit	uninfected	mature	23.6965
SRR7403506	fruit	uninfected	mature	22.5794
SRR7403507	fruit	uninfected	mature	23.5459
SRR7403500	fruit	infected with penicillium expansum	mature	0.620724
SRR7403501	fruit	infected with penicillium expansum	mature	1.22819
SRR7403508	fruit	infected with penicillium expansum	mature	0.88539
SRR7403502	fruit	infected with penicillium expansum	mature	2.13917
SRR7403503	fruit	infected with penicillium expansum	mature	1.14686
SRR7403505	fruit	infected with penicillium expansum	mature	1.46042
SRR1613973	Central seeds	no	20DAPF	18.6234
SRR1613974	Central seeds	no	20DAPF	19.2437
SRR1613975	Central seeds	no	20DAPF	19.8953
SRR1613976	Lateral seeds	no	20DAPF	20.1369
SRR1613977	Lateral seeds	no	20DAPF	22.8039
SRR1613978	Lateral seeds	no	20DAPF	22.1445
SRR3744786	stem	no	mature	19.6353
SRR3744787	stem	no	mature	19.7655
SRR3744772	stem	no	mature	20.803
SRX765691	seedling shoot apex	no	4-6 week old seedling	11.3295
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.76932
SRR1089478	leaf	Virus-free	plantlets	11.0681
SRR1089477	leaf	ASGV-infected	plantlets	13.3074
SRR767660	leaf	uninfected	fully developed	11.3625
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	80.0203
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.8184
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	14.499
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	29.7885
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	21.3125
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	24.7526
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	25.4014
SRR6308182	young leaf	no	immature leaves	16.544
SRR3744769	leaf	no	mature	23.6588
SRR3744770	leaf	no	mature	23.2821
SRR3744771	leaf	no	mature	25.4776
SRR5405145	leaf	no	mature	83.1429
SRR6320561	leaf	no	mature	70.0019