Gene detail

Detail information of MD13G1192800 Annotation

Gene ID	Annotation
MD13G1192800	imidazoleglycerol-phosphate dehydratase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1192800	mRNA	Chr13	16631073	16634018	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G14910.1	1	HISN5B\|HISTIDINE BIOSYNTHESIS 5B
Arabidopsis thaliana	AT4G14910.3	0.924	HISN5B\|HISTIDINE BIOSYNTHESIS 5B
Arabidopsis thaliana	AT4G14910.2	0.912	HISN5B\|HISTIDINE BIOSYNTHESIS 5B
Pyrus communis	PCP012309.1	1	-
Pyrus x bretschneideri	Pbr037086.1	1	-
Rosa multiflora	Rmu_sc0001145.1_g000009.1	1	-
Fragaria vesca	mrna09861.1	1	HISTIDINE BIOSYNTHESIS 5B
Vitis vinifera	GSVIVT01017973001	1	HISTIDINE BIOSYNTHESIS 5B
Solanum lycopersicum	Solyc09g076020.2.1	1	imidazoleglycerol-phosphate dehydratase
Populus trichocarpa	Potri.010G087600.1	1	HISTIDINE BIOSYNTHESIS 5B
Nicotiana benthamiana	Niben101Scf05419g00007.1	1	imidazoleglycerol-phosphate dehydratase LENGTH=270
Oryza sativa	LOC_Os04g52710.1	1	"imidazoleglycerol-phosphate dehydratase, putative, expressed"
Zea mays	GRMZM2G094255_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0000105	histidine biosynthetic process	biological_process
GO:0004424	imidazoleglycerol-phosphate dehydratase activity	molecular_function

KEGG

KO	Description	Enzyme
K01693	imidazoleglycerol-phosphate dehydratase	EC:4.2.1.19

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	15.9922
SRR5252888	dormant buds	no	dormant buds(0 month)	5.21107
SRR5252889	dormant buds	no	dormant buds(0 month)	6.63297
SRR5252886	dormant buds	no	dormant buds(1 months)	5.06688
SRR5252887	dormant buds	no	dormant buds(1 months)	7.12222
SRR5252884	dormant buds	no	dormant buds(2 months)	4.3
SRR5252882	dormant buds	no	dormant buds(3 months)	4.5909
SRR5252883	dormant buds	no	dormant buds(3 months)	5.00257
SRR5252880	dormant buds	no	dormant buds(4 months)	4.02639
SRR5252881	dormant buds	no	dormant buds(4 months)	5.31672
SRR5252878	bud break	no	bud break	4.70185
SRR5252879	bud break	no	bud break	5.13717
SRR3744766	flower	no	mature	5.08985
SRR3744767	flower	no	mature	4.68951
SRR3744768	flower	no	mature	5.47511
SRR6308190	stigmas	no	open flowers	7.58946
SRR6308181	styles	no	open flowers	9.83049
SRR6308188	filaments	no	open flowers	12.7929
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.9291
SRR6308192	pollen	no	open flowers	0.834589
SRR6308191	petals	no	open flowers	8.73877
SRR6308194	sepals	no	open flowers	7.05838
SRR6308193	receptacles	no	open flowers	11.3512
SRR6308189	ovaries	no	open flowers	9.45089
SRR3384922	fruit	no	1 week after full bloom	14.262
SRR3384921	fruit	no	2 week after full bloom	15.9312
SRR3384920	fruit	no	3 week after full bloom	21.7243
SRR3384919	fruit	no	4 week after full bloom	20.6435
SRR3384923	fruit	no	5 week after full bloom	25.5758
SRR3384918	fruit	no	6 week after full bloom	22.2791
SRR3384917	fruit	no	8 week after full bloom	29.6237
SRR3384916	fruit	no	10 week after full bloom	28.1796
SRR3384915	fruit	no	12 week after full bloom	28.4247
SRR3384914	fruit	no	14 week after full bloom	34.1006
SRR3384913	fruit	no	16 week after full bloom	26.9304
SRR3384912	fruit	no	18 week after full bloom	29.7497
SRR3384911	fruit	no	19 week after full bloom	31.927
SRR3384910	fruit	no	20 week after full bloom	26.1909
SRR768128	whole fruit	no	25 days post anthesis	15.1125
SRR768129	whole fruit	no	35 days post anthesis	19.7774
SRR768130	whole fruit	no	60 days post anthesis	19.3185
SRR768131	whole fruit	no	87 days post anthesis	18.7733
SRR7343308	immature fruit flesh	no	immature	17.7048
SRR7343309	immature fruit flesh	no	immature	21.5142
SRR6320494	ripe fruit flesh	no	mature	26.8098
SRR5405143	ripe fruit peel	no	mature	41.3089
SRR6320572	ripe fruit peel	no	mature	41.9177
SRR7403504	fruit	uninfected	mature	33.6033
SRR7403506	fruit	uninfected	mature	34.9244
SRR7403507	fruit	uninfected	mature	35.3035
SRR7403500	fruit	infected with penicillium expansum	mature	15.7823
SRR7403501	fruit	infected with penicillium expansum	mature	16.0757
SRR7403508	fruit	infected with penicillium expansum	mature	13.0874
SRR7403502	fruit	infected with penicillium expansum	mature	14.8301
SRR7403503	fruit	infected with penicillium expansum	mature	16.9091
SRR7403505	fruit	infected with penicillium expansum	mature	15.1992
SRR1613973	Central seeds	no	20DAPF	13.9881
SRR1613974	Central seeds	no	20DAPF	14.0487
SRR1613975	Central seeds	no	20DAPF	14.2054
SRR1613976	Lateral seeds	no	20DAPF	12.1346
SRR1613977	Lateral seeds	no	20DAPF	12.7996
SRR1613978	Lateral seeds	no	20DAPF	12.1054
SRR3744786	stem	no	mature	6.56134
SRR3744787	stem	no	mature	6.19532
SRR3744772	stem	no	mature	7.0108
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.40578
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.4734
SRR1089478	leaf	Virus-free	plantlets	13.7456
SRR1089477	leaf	ASGV-infected	plantlets	14.0549
SRR767660	leaf	uninfected	fully developed	12.9254
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	6.76344
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.2418
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	9.82268
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	26.9331
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	19.5954
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	11.6704
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	15.3506
SRR6308182	young leaf	no	immature leaves	9.76817
SRR3744769	leaf	no	mature	7.9292
SRR3744770	leaf	no	mature	9.17195
SRR3744771	leaf	no	mature	8.40045
SRR5405145	leaf	no	mature	44.986
SRR6320561	leaf	no	mature	30.74