Gene detail

Detail information of MD13G1197800 Annotation

Gene ID	Annotation
MD13G1197800	TESMIN/TSO1-like CXC 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0735	CPP cell proliferation DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] histone H2B DMT HTB Leucine Rich Repeat Kinase VII DNA (cytosine-5-)-methyltransferase activity methylation-dependent chromatin silencing DNA methylation on cytosine within a CNG sequence chromatin silencing by small RNA zygote asymmetric cytokinesis in embryo sac

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1197800	mRNA	Chr13	17439686	17444747	+

Sequences

CDS:

MD13G1197800

GCCCTGCTTGTTTCCAAAATCTCCCGCCTTCCCGCTTCTTGAAAATCCTAGACCTATTTTCCAAATTCCAGCAGACCCACCTCGCCATTTCTTCCTTTTTTTTTACAGTTTGGGCTTTAGAGAGAAGGAGACCAAATTCAGCACCAAAACGTAGAGAGGGAGAGAGAGAGAGAGAGAGTAGCGGTGGTTGTGGGCTGATGGAGTGGCTGAGGTAGTGGTGGCATGCGGTGGAGCTGCCTCTCTGGAAATGGACACCCCCGAGAGGAACCAGATCGGCACCCCCAAGGCCAAATTTGAGGATTCTCCAGTCTTTAACTATATCAATAGTCTTTCTCCTATCAAGCCGGTTAAGTCTGTGCACATTACTCAGACGTTCAGCTCCCTCAGTTTCGCTTCCCTTCCTTCCGTTTTCACTTCACCCCATGTCAGTTCTCACAAGGAATCCAGGTTCCTGAGGAGGCATAACCCTTCAGATCCGTCAAAACCTGAGTCCTCTCTGGAAAGCGGTAACAAAGTCTCTGTGAATGAAGATGCGGCTGAATTCTATATTAACGCAGAGGAGCTGCATGAGAGTTGTGTTCCAGTGGATTCTGTAGGAGAAGCTTCTGCGGAACCACCTAGTGAGCACTCAAAGTTTGTGATTGAGCTGCCGCGAAATTTGAAATATGACTGTGGTAGCCCTGAATGTGACGCAGCAACTTCTTGTGGTACTGAGGCAGGTTGTGAGTCGGAAGCAGCTGCCTTGTCAGCTCCACTCGTTCCATATGCTCAAAAGACCTCTGAAAATGGTTCATCTGATGGTGAAGCACATCTACAGAGCATATGCCAGAGTGGCCAAAGAAGAGAAGGGACAGGCTGTGATTGGGAGAGTTTGATCTCTGATGCTACCGACCTATTAATTTTCGATTCCCCCAATGCCTCAGAGGCTTTCAGGGGGATAATGCAGAATCCTCTGGACTCCGTAACAAGATTTTGTAATTCTCTTATGCCGCGACTCTCACAGAATGACATTAATGATGAGCAAAACGTGCTAGTCCTTGATACAGTTGGTTCCGGAGAACAACCTGAAACTGAAGATCCTTCCTCTCAATATGGAGAAGCTAGTCAGCCGGAAGATACAGAACTGATGCAGGACCATTTGAATAGTTGTATGGGTAGCAATCAAATCGAGAAAGAAGATCAGTTCAATTGTAAGCCTGGTTTAAATTTGCATCGTGGCTTGCGAAGGCGCTGTCTGGATTTTGAGACGGCAGGAGCTCGCAGGAAGAGTTTAGACAATGTTCCAAATTTTAGTTCTTCTATGTTATCTCAATCTGATGAAAAAATCACTACAAATGATAAGCAACTGGTTCCAATAAAACCTGGTGGTGAATCCGCCCGGTGCATCTTACCTGGAATTGGTTTGCACCTAAATGCTCTTGCAACAACCTCAAAAGACTACAAGACCATTAAGCGTGAAAATATGGCCTATGGTAGACAACTAAGTTTACCCAACCTCGCTGCCTCTGCTCATTCCCCCACAGCTGGTCAAGGACCTGGTCATGAATCTTTCTCTTCGGCTTCTTCTGAAAGGGACATGGATGGCACCGAAAATGGCGTTCAGCTGCTGCAAGATGCTTCCCAAGAACCTGCATTTTTAGCTAATGAAGAGTTTAACCAGAATAGCCCCAAAAAGAAGAGGCGCAAGTTCGAACAAGCTGGAGAAACCGAGTCTTCTTGCAAACGTTGCAACTGTAAAAAATCGAAGTGTCTGAAACTTTACTGTGAATGCTTTGCTGCTGGTGTCTACTGCATAGAGCCATGTTCATGTCAAGAATGCTTTAACAAGCCTATTCATGAAGATACTGTTCTTGCAACTCGTAAACAGATTGAGTCTCGCAACCCACTTGCATTTGCTCCGAAAGTGATTAGGACCGCTGATCCTGTTCCTGAATATGGGGAGGAGTCCAGCAAGACCCCAGCTTCTGCGCGGCATAAAAGAGGTTGCAACTGCAAGAAATCAAGCTGCCTGAAAAAATACTGTGAATGCTATCAGGGCGGTGTTGGATGCTCCATTAGCTGCAGATGTGAAGGCTGTAAAAACGCATTTGGTAGAAAGGATGGATCTTTTGTAGGAACAGAAACTGAGGCAGACGAAGAAGAAACAGAAGCATGCGACAAGAGTGTGGCTGAAAAACATCAACAGAAAAATGAAATTCAGAGAAATGAAGAGCAGCGCCAGGATTCTGCTCTTCCCTCAACGCCATTACGGCTTTCCAGACAATTCTCACTGCCGTTTTCGTCAAAGAACAAACCGCCAAGATCTTCTACTTTTAACATTGGATCGTCTTCGGGATTATATACAATCACAATCCAGAAACTCGGAAAACCAAATATTCTGCGCCCTGAATCCAAGTTAGAGGGACATAACCAAGCAGTTGCAGAGGATGAAATGCCAGAGATTCTTCAAGGAGATGGGTCTCCTAGCACTGGCATCAAGACCGCTTCTCCGAATGGTAAGAGGGTGTCCCCTCCCAATAATGAATTTGGGCCATCACCTGGTCGAAGGGCGGGTAGGAAACTAATTTTGCAGTCCATTCCTTCGTTCCCGTCCCTCACTCCCCAGCATTGAGGTGGTTGGACTTTCGCGAAGCTAAATCTTTTAGTATACCTTGTACTCCAAAGATATTAAGTTCAGTTCTGTATGCCGTTTCAGTTAGTTTTTTTTCTTTTTTTTCTTTTTTTTTTTCCTTCTGTACTTGTATAATAATAATAAGGTATCCCTGCTCTC

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	CPP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G14770.1	1	ATTCX2;TCX2\|TESMIN/TSO1-LIKE CXC 2
Pyrus communis	PCP041149.1	1	-
Rosa multiflora	Rmu_sc0000013.1_g000028.1	1	-
Rubus occidentalis	Ro04_G26085	1	-
Fragaria vesca	mrna29973.1	1	TESMIN/TSO1-like CXC 2
Vitis vinifera	GSVIVT01018021001	1	Tesmin/TSO1-like CXC domain-containing protein
Solanum lycopersicum	Solyc09g082500.2.1	1	Tesmin/TSO1-like CXC domain-containing protein
Populus trichocarpa	Potri.008G156100.1	1	TESMIN/TSO1-like CXC 2
Nicotiana benthamiana	Niben101Scf03469g01004.1	1	Protein tesmin/TSO1-like CXC 2
Oryza sativa	LOC_Os07g07974.1	1	"tesmin/TSO1-like CXC domain containing protein, expressed"
Oryza sativa	LOC_Os12g41230.3	1	"tesmin/TSO1-like CXC domain containing protein, expressed"
Oryza sativa	LOC_Os03g43730.1	1	"tesmin/TSO1-like CXC domain containing protein, expressed"
Zea mays	GRMZM2G153754_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03638.11	TCR	492	527	1.50E-11
PF03638.11	TCR	577	613	1.20E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.68942
SRR5252888	dormant buds	no	dormant buds(0 month)	0.519597
SRR5252889	dormant buds	no	dormant buds(0 month)	0.535044
SRR5252886	dormant buds	no	dormant buds(1 months)	1.24675
SRR5252887	dormant buds	no	dormant buds(1 months)	0.272805
SRR5252884	dormant buds	no	dormant buds(2 months)	0.560146
SRR5252882	dormant buds	no	dormant buds(3 months)	0.749061
SRR5252883	dormant buds	no	dormant buds(3 months)	0.170048
SRR5252880	dormant buds	no	dormant buds(4 months)	2.55419
SRR5252881	dormant buds	no	dormant buds(4 months)	1.90156
SRR5252878	bud break	no	bud break	8.87316
SRR5252879	bud break	no	bud break	8.49763
SRR3744766	flower	no	mature	0.478805
SRR3744767	flower	no	mature	0.486007
SRR3744768	flower	no	mature	0.474906
SRR6308190	stigmas	no	open flowers	0.0499533
SRR6308181	styles	no	open flowers	0.172065
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.641592
SRR6308193	receptacles	no	open flowers	0.426445
SRR6308189	ovaries	no	open flowers	0.762821
SRR3384922	fruit	no	1 week after full bloom	1.11023
SRR3384921	fruit	no	2 week after full bloom	4.42751
SRR3384920	fruit	no	3 week after full bloom	2.31125
SRR3384919	fruit	no	4 week after full bloom	1.77509
SRR3384923	fruit	no	5 week after full bloom	0.489303
SRR3384918	fruit	no	6 week after full bloom	0.544696
SRR3384917	fruit	no	8 week after full bloom	0.11796
SRR3384916	fruit	no	10 week after full bloom	0.2554
SRR3384915	fruit	no	12 week after full bloom	0.181312
SRR3384914	fruit	no	14 week after full bloom	0.0879233
SRR3384913	fruit	no	16 week after full bloom	0.103559
SRR3384912	fruit	no	18 week after full bloom	0.0323949
SRR3384911	fruit	no	19 week after full bloom	0.0932115
SRR3384910	fruit	no	20 week after full bloom	0.0486547
SRR768128	whole fruit	no	25 days post anthesis	5.39077
SRR768129	whole fruit	no	35 days post anthesis	4.25611
SRR768130	whole fruit	no	60 days post anthesis	0.778448
SRR768131	whole fruit	no	87 days post anthesis	0.146486
SRR7343308	immature fruit flesh	no	immature	0.517423
SRR7343309	immature fruit flesh	no	immature	0.860071
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.717325
SRR1613974	Central seeds	no	20DAPF	1.03973
SRR1613975	Central seeds	no	20DAPF	0.913864
SRR1613976	Lateral seeds	no	20DAPF	1.36465
SRR1613977	Lateral seeds	no	20DAPF	1.0009
SRR1613978	Lateral seeds	no	20DAPF	0.952916
SRR3744786	stem	no	mature	0.465948
SRR3744787	stem	no	mature	0.342267
SRR3744772	stem	no	mature	0.630236
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.07583
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.41058
SRR1089478	leaf	Virus-free	plantlets	4.22609
SRR1089477	leaf	ASGV-infected	plantlets	4.1523
SRR767660	leaf	uninfected	fully developed	0.343103
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	4.8901
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.57105
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.820369
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.0868162
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.437399
SRR6308182	young leaf	no	immature leaves	12.252
SRR3744769	leaf	no	mature	0.613245
SRR3744770	leaf	no	mature	0.614653
SRR3744771	leaf	no	mature	0.576408
SRR5405145	leaf	no	mature	2.00236
SRR6320561	leaf	no	mature	1.18471