Gene detail

Detail information of MD13G1212300 Annotation

Gene ID	Annotation
MD13G1212300	nodulin MtN21 /EamA-like transporter family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1212300	mRNA	Chr13	19806770	19809405	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G037200.1.p	1	nodulin MtN21 /EamA-like transporter family protein
Pyrus x bretschneideri	Pbr023053.1	1	-
Rubus occidentalis	Ro04_G12437	1	-
Fragaria vesca	mrna11434.1	1	nodulin MtN21 /EamA-like transporter family protein
Vitis vinifera	GSVIVT01027765001	1	nodulin MtN21 /EamA-like transporter family protein
Populus trichocarpa	Potri.008G165600.1	1	nodulin MtN21 /EamA-like transporter family protein
Oryza sativa	LOC_Os03g05530.1	1	"nodulin, putative, expressed"
Zea mays	GRMZM2G139834_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.21688
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0644652
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0751293
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.24019
SRR5252881	dormant buds	no	dormant buds(4 months)	0.199951
SRR5252878	bud break	no	bud break	0.239237
SRR5252879	bud break	no	bud break	0.265287
SRR3744766	flower	no	mature	0
SRR3744767	flower	no	mature	0
SRR3744768	flower	no	mature	0.022204
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.102075
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.168986
SRR3384921	fruit	no	2 week after full bloom	0.182917
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0.141505
SRR3384918	fruit	no	6 week after full bloom	0.105016
SRR3384917	fruit	no	8 week after full bloom	0.075808
SRR3384916	fruit	no	10 week after full bloom	0.0492404
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.0677778
SRR768129	whole fruit	no	35 days post anthesis	0.14886
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0746593
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0247266
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.122353
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0217242
SRR1089478	leaf	Virus-free	plantlets	1.0822
SRR1089477	leaf	ASGV-infected	plantlets	0.923392
SRR767660	leaf	uninfected	fully developed	4.93933
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.943
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.98322
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.41797
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.999316
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.65942
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.27991
SRR6308182	young leaf	no	immature leaves	0.341816
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	1.34907
SRR6320561	leaf	no	mature	1.55927