Gene detail

Detail information of MD13G1264600 Annotation

Gene ID	Annotation
MD13G1264600	ADP-ribosylation factor 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1264600	mRNA	Chr13	34155843	34161586	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G24765.1	1	ARF3;ARL1;ATARL1\|ADP-ribosylation factor 3;ARF-LIKE 1
Prunus persica	Prupe.1G092100.1.p	1	ADP-ribosylation factor 3
Pyrus communis	PCP042071.1	1	-
Rosa multiflora	Rmu_sc0006376.1_g000005.1	1	-
Rubus occidentalis	Ro04_G03212	1	-
Fragaria vesca	mrna27391.1	1	ADP-ribosylation factor 3
Vitis vinifera	GSVIVT01029113001	1	ADP-ribosylation factor 3
Solanum lycopersicum	Solyc07g006640.2.1	1	ADP-ribosylation factor 3
Solanum lycopersicum	Solyc05g005190.2.1	1	ADP-ribosylation factor A1F
Solanum lycopersicum	Solyc06g072800.2.1	1	ADP-ribosylation factor B1C
Solanum lycopersicum	Solyc03g096910.2.1	1	ADP-ribosylation factor B1B
Populus trichocarpa	Potri.T094300.2	1	ADP-ribosylation factor 3
Nicotiana benthamiana	Niben101Scf01907g00002.1	1	ADP-ribosylation factor 3 LENGTH=182
Oryza sativa	LOC_Os08g15040.1	1	"ADP-ribosylation factor, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0005525	GTP binding	molecular_function
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K07942	ADP-ribosylation factor-like protein 1	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00025.17	Arf	5	176	1.30E-77

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	25.2256
SRR5252888	dormant buds	no	dormant buds(0 month)	14.8639
SRR5252889	dormant buds	no	dormant buds(0 month)	15.2188
SRR5252886	dormant buds	no	dormant buds(1 months)	28.0363
SRR5252887	dormant buds	no	dormant buds(1 months)	30.4052
SRR5252884	dormant buds	no	dormant buds(2 months)	23.1456
SRR5252882	dormant buds	no	dormant buds(3 months)	15.4217
SRR5252883	dormant buds	no	dormant buds(3 months)	18.1313
SRR5252880	dormant buds	no	dormant buds(4 months)	15.715
SRR5252881	dormant buds	no	dormant buds(4 months)	13.397
SRR5252878	bud break	no	bud break	45.0215
SRR5252879	bud break	no	bud break	44.2873
SRR3744766	flower	no	mature	16.7637
SRR3744767	flower	no	mature	16.4727
SRR3744768	flower	no	mature	17.0949
SRR6308190	stigmas	no	open flowers	19.6939
SRR6308181	styles	no	open flowers	18.3418
SRR6308188	filaments	no	open flowers	21.4938
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	42.7151
SRR6308192	pollen	no	open flowers	144.7
SRR6308191	petals	no	open flowers	14.8125
SRR6308194	sepals	no	open flowers	17.0929
SRR6308193	receptacles	no	open flowers	18.3187
SRR6308189	ovaries	no	open flowers	21.8763
SRR3384922	fruit	no	1 week after full bloom	30.7776
SRR3384921	fruit	no	2 week after full bloom	28.4616
SRR3384920	fruit	no	3 week after full bloom	31.0002
SRR3384919	fruit	no	4 week after full bloom	35.2642
SRR3384923	fruit	no	5 week after full bloom	26.2179
SRR3384918	fruit	no	6 week after full bloom	34.7114
SRR3384917	fruit	no	8 week after full bloom	21.8867
SRR3384916	fruit	no	10 week after full bloom	28.499
SRR3384915	fruit	no	12 week after full bloom	34.8201
SRR3384914	fruit	no	14 week after full bloom	31.0262
SRR3384913	fruit	no	16 week after full bloom	31.5156
SRR3384912	fruit	no	18 week after full bloom	35.137
SRR3384911	fruit	no	19 week after full bloom	22.467
SRR3384910	fruit	no	20 week after full bloom	26.26
SRR768128	whole fruit	no	25 days post anthesis	31.4045
SRR768129	whole fruit	no	35 days post anthesis	27.4691
SRR768130	whole fruit	no	60 days post anthesis	25.7166
SRR768131	whole fruit	no	87 days post anthesis	22.014
SRR7343308	immature fruit flesh	no	immature	17.9717
SRR7343309	immature fruit flesh	no	immature	14.8032
SRR6320494	ripe fruit flesh	no	mature	20.533
SRR5405143	ripe fruit peel	no	mature	15.339
SRR6320572	ripe fruit peel	no	mature	10.3309
SRR7403504	fruit	uninfected	mature	17.7396
SRR7403506	fruit	uninfected	mature	15.5345
SRR7403507	fruit	uninfected	mature	16.542
SRR7403500	fruit	infected with penicillium expansum	mature	19.7118
SRR7403501	fruit	infected with penicillium expansum	mature	27.6357
SRR7403508	fruit	infected with penicillium expansum	mature	24.8156
SRR7403502	fruit	infected with penicillium expansum	mature	20.357
SRR7403503	fruit	infected with penicillium expansum	mature	19.3166
SRR7403505	fruit	infected with penicillium expansum	mature	17.1824
SRR1613973	Central seeds	no	20DAPF	20.2767
SRR1613974	Central seeds	no	20DAPF	19.4904
SRR1613975	Central seeds	no	20DAPF	18.0274
SRR1613976	Lateral seeds	no	20DAPF	20.9918
SRR1613977	Lateral seeds	no	20DAPF	19.2113
SRR1613978	Lateral seeds	no	20DAPF	18.9112
SRR3744786	stem	no	mature	9.62994
SRR3744787	stem	no	mature	10.5099
SRR3744772	stem	no	mature	10.6562
SRX765691	seedling shoot apex	no	4-6 week old seedling	27.5888
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	28.0591
SRR1089478	leaf	Virus-free	plantlets	14.5595
SRR1089477	leaf	ASGV-infected	plantlets	10.5031
SRR767660	leaf	uninfected	fully developed	7.52818
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	26.8094
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.52876
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	19.0716
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	38.7026
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	9.00554
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.00966
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.96485
SRR6308182	young leaf	no	immature leaves	24.6273
SRR3744769	leaf	no	mature	8.99794
SRR3744770	leaf	no	mature	10.2268
SRR3744771	leaf	no	mature	11.06
SRR5405145	leaf	no	mature	4.67489
SRR6320561	leaf	no	mature	9.89401