Gene detail

Detail information of MD13G1274100 Annotation

Gene ID	Annotation
MD13G1274100	Cytochrome c oxidase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD13G1274100	mRNA	Chr13	37196744	37199696	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G57815.1	1	"Cytochrome c oxidase, subunit Vib family protein"
Arabidopsis thaliana	AT4G28060.1	0.783	"Cytochrome c oxidase, subunit Vib family protein"
Prunus persica	Prupe.1G098600.2.p	1	"Cytochrome c oxidase, subunit Vib family protein"
Prunus persica	Prupe.1G098600.3.p	1	"Cytochrome c oxidase, subunit Vib family protein"
Rosa multiflora	Rmu_sc0001744.1_g000012.1	1	-
Fragaria vesca	mrna28822.1	1	"Cytochrome c oxidase, subunit Vib family protein"
Vitis vinifera	GSVIVT01023725001	1	cytochrome C oxidase 6B
Solanum lycopersicum	Solyc07g006270.2.1	1	cytochrome C oxidase 6B
Populus trichocarpa	Potri.018G099900.1	1	cytochrome C oxidase 6B
Nicotiana benthamiana	Niben101Scf03964g01003.1	1	Cytochrome c oxidase subunit 6b-1
Oryza sativa	LOC_Os02g54880.1	1	"cytochrome c oxidase subunit, putative"
Zea mays	GRMZM2G067417_P01	1	Cytochrome c oxidase polypeptide VIb; Cytochrome c oxidase polypeptide VIb isoform 1; Cytochrome c oxidase polypeptide VIb isoform 2

Gene Ontology

GO term	Description	Category
GO:0005739	mitochondrion	cellular component
GO:0004129	cytochrome-c oxidase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02297.13	COX6B	14	72	1.20E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	65.6805
SRR5252888	dormant buds	no	dormant buds(0 month)	5.8824
SRR5252889	dormant buds	no	dormant buds(0 month)	6.81444
SRR5252886	dormant buds	no	dormant buds(1 months)	9.05748
SRR5252887	dormant buds	no	dormant buds(1 months)	8.78401
SRR5252884	dormant buds	no	dormant buds(2 months)	9.80044
SRR5252882	dormant buds	no	dormant buds(3 months)	5.01102
SRR5252883	dormant buds	no	dormant buds(3 months)	6.82545
SRR5252880	dormant buds	no	dormant buds(4 months)	4.23164
SRR5252881	dormant buds	no	dormant buds(4 months)	4.05646
SRR5252878	bud break	no	bud break	6.13068
SRR5252879	bud break	no	bud break	7.54182
SRR3744766	flower	no	mature	43.2665
SRR3744767	flower	no	mature	41.6141
SRR3744768	flower	no	mature	42.6369
SRR6308190	stigmas	no	open flowers	33.3957
SRR6308181	styles	no	open flowers	35.2728
SRR6308188	filaments	no	open flowers	32.8413
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	75.5553
SRR6308192	pollen	no	open flowers	310.172
SRR6308191	petals	no	open flowers	35.3263
SRR6308194	sepals	no	open flowers	25.8458
SRR6308193	receptacles	no	open flowers	32.2001
SRR6308189	ovaries	no	open flowers	33.4677
SRR3384922	fruit	no	1 week after full bloom	39.6106
SRR3384921	fruit	no	2 week after full bloom	45.6108
SRR3384920	fruit	no	3 week after full bloom	81.6121
SRR3384919	fruit	no	4 week after full bloom	86.2026
SRR3384923	fruit	no	5 week after full bloom	77.4447
SRR3384918	fruit	no	6 week after full bloom	68.6331
SRR3384917	fruit	no	8 week after full bloom	75.5307
SRR3384916	fruit	no	10 week after full bloom	77.4553
SRR3384915	fruit	no	12 week after full bloom	95.0973
SRR3384914	fruit	no	14 week after full bloom	70.4176
SRR3384913	fruit	no	16 week after full bloom	92.0018
SRR3384912	fruit	no	18 week after full bloom	88.5399
SRR3384911	fruit	no	19 week after full bloom	92.3087
SRR3384910	fruit	no	20 week after full bloom	67.9176
SRR768128	whole fruit	no	25 days post anthesis	47.5287
SRR768129	whole fruit	no	35 days post anthesis	57.7815
SRR768130	whole fruit	no	60 days post anthesis	43.8534
SRR768131	whole fruit	no	87 days post anthesis	27.9074
SRR7343308	immature fruit flesh	no	immature	21.8816
SRR7343309	immature fruit flesh	no	immature	26.1185
SRR6320494	ripe fruit flesh	no	mature	53.2007
SRR5405143	ripe fruit peel	no	mature	46.0735
SRR6320572	ripe fruit peel	no	mature	16.9883
SRR7403504	fruit	uninfected	mature	57.386
SRR7403506	fruit	uninfected	mature	53.8081
SRR7403507	fruit	uninfected	mature	51.9129
SRR7403500	fruit	infected with penicillium expansum	mature	68.7322
SRR7403501	fruit	infected with penicillium expansum	mature	64.6109
SRR7403508	fruit	infected with penicillium expansum	mature	60.9516
SRR7403502	fruit	infected with penicillium expansum	mature	56.8485
SRR7403503	fruit	infected with penicillium expansum	mature	53.231
SRR7403505	fruit	infected with penicillium expansum	mature	54.9289
SRR1613973	Central seeds	no	20DAPF	39.5363
SRR1613974	Central seeds	no	20DAPF	37.836
SRR1613975	Central seeds	no	20DAPF	44.5225
SRR1613976	Lateral seeds	no	20DAPF	42.6138
SRR1613977	Lateral seeds	no	20DAPF	47.6487
SRR1613978	Lateral seeds	no	20DAPF	44.0245
SRR3744786	stem	no	mature	24.3042
SRR3744787	stem	no	mature	25.0245
SRR3744772	stem	no	mature	23.8349
SRX765691	seedling shoot apex	no	4-6 week old seedling	22.9568
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	31.1527
SRR1089478	leaf	Virus-free	plantlets	15.3543
SRR1089477	leaf	ASGV-infected	plantlets	13.516
SRR767660	leaf	uninfected	fully developed	18.3601
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	14.7337
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	13.1924
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	54.2259
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	76.275
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	32.8647
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.4644
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	23.8617
SRR6308182	young leaf	no	immature leaves	28.8693
SRR3744769	leaf	no	mature	24.2581
SRR3744770	leaf	no	mature	22.4526
SRR3744771	leaf	no	mature	24.4034
SRR5405145	leaf	no	mature	8.62722
SRR6320561	leaf	no	mature	11.7043