Gene ID | Annotation |
---|---|
MD14G1018800 | 60S acidic ribosomal protein family |
Network Category | Global Network | Conditional network (different tissues and developmental stages) |
---|---|---|
Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
Method | Module ID | Function Annotation |
---|---|---|
Co-expression network | CFinderM0750 | ubiquitin-protein ligase E3 C [EC:2.3.2.26] HECT protein ubiquitination involved in ubiquitin-dependent protein catabolic process structural constituent of ribosome ubiquitin ligase complex small subunit ribosomal protein S16e large subunit ribosomal protein LP2 large subunit ribosomal protein L27e ubiquitin-protein transferase activity RNA methylation translation |
more details in UCSC | details of chromatin state |
Gene | Type | Chr | Start | End | Strand |
---|---|---|---|---|---|
MD14G1018800 | mRNA | Chr14 | 1764131 | 1766053 | - |
CDS: |
MD14G1018800 |
Protein: |
MD14G1018800 |
Gene family | Subfamily |
---|---|
-- | -- |
Species | Gene ID | Score of Inparanoid | Annotation |
---|---|---|---|
Arabidopsis thaliana | AT2G27720.1 | 1 | 60S acidic ribosomal protein family |
Arabidopsis thaliana | AT2G27710.2 | 1 | 60S acidic ribosomal protein family |
Arabidopsis thaliana | AT2G27710.3 | 1 | 60S acidic ribosomal protein family |
Arabidopsis thaliana | AT2G27710.1 | 1 | 60S acidic ribosomal protein family |
Arabidopsis thaliana | AT2G27720.3 | 0.83 | 60S acidic ribosomal protein family |
Arabidopsis thaliana | AT2G27720.2 | 0.774 | 60S acidic ribosomal protein family |
Pyrus communis | PCP002734.1 | 1 | - |
Rosa multiflora | Rmu_sc0003510.1_g000027.1 | 1 | - |
Rosa multiflora | Rmu_sc0011581.1_g000006.1 | 1 | - |
Rubus occidentalis | Ro06_G11855 | 1 | - |
Vitis vinifera | GSVIVT01031366001 | 1 | 60S acidic ribosomal protein family |
Solanum lycopersicum | Solyc11g067100.1.1 | 1 | 60S acidic ribosomal protein family |
Populus trichocarpa | Potri.009G146200.1 | 1 | 60S acidic ribosomal protein family |
Populus trichocarpa | Potri.004G185800.1 | 0.744 | 60S acidic ribosomal protein family |
Nicotiana benthamiana | Niben101Scf11937g02001.1 | 1 | 60S acidic ribosomal protein P2 |
Nicotiana benthamiana | Niben101Scf05610g03019.1 | 1 | 60S acidic ribosomal protein P2 |
Nicotiana benthamiana | Niben101Scf02582g00003.1 | 0.907 | 60S acidic ribosomal protein P2 |
Nicotiana benthamiana | Niben101Scf06081g02016.1 | 0.739 | 60S acidic ribosomal protein P2 |
Nicotiana benthamiana | Niben101Scf01250g02002.1 | 0.674 | 60S acidic ribosomal protein P2 |
Oryza sativa | LOC_Os08g15180.1 | 1 | "60S acidic ribosomal protein, putative" |
Oryza sativa | LOC_Os05g37330.1 | 1 | "60S acidic ribosomal protein, putative, expressed" |
Zea mays | GRMZM2G010257_P01 | 1 | 60S acidic ribosomal protein P2A; |
Zea mays | GRMZM2G102891_P01 | 0.75 | - |
Zea mays | GRMZM2G119809_P01 | 0.733 | protein_coding |
Zea mays | GRMZM2G075630_P01 | 0.683 | 60S acidic ribosomal protein P2A; Acidic ribosomal protein P2a-4; |
Zea mays | GRMZM2G105712_P01 | 0.683 | 60S acidic ribosomal protein P2A; Acidic ribosomal protein P2a-4 isoform 1; Acidic ribosomal protein P2a-4 isoform 2; Acidic ribosomal protein P2a-4 isoform 3; Acidic ribosomal protein P2a-4 isoform 4; |
GO term | Description | Category |
---|---|---|
GO:0003735 | structural constituent of ribosome | molecular_function |
GO:0005840 | ribosome | cellular component |
GO:0006414 | translational elongation | biological_process |
KO | Description | Enzyme |
---|---|---|
K02943 | large subunit ribosomal protein LP2 | - |
Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|
-- | -- | -- | -- | -- |