Gene detail

Detail information of MD14G1022900 Annotation

Gene ID	Annotation
MD14G1022900	Ribosomal protein L1p/L10e family

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0762	cytosolic large ribosomal subunit tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] large subunit ribosomal protein L10Ae large subunit ribosomal protein L5e transcription initiation factor TFIIF subunit alpha tRNA (guanine-N7-)-methyltransferase activity 5S rRNA binding protein C-terminus binding acetate biosynthetic process from carbon monoxide ribosome assembly protein targeting to mitochondrion methanol oxidation RNA methylation adaxial/abaxial pattern specification tRNA modification cyclin-dependent protein serine/threonine kinase regulator activity structural constituent of ribosome RNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1022900	mRNA	Chr14	2064927	2067638	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.7G110300.1.p	1	Ribosomal protein L1p/L10e family
Pyrus communis	PCP038640.1	1	-
Pyrus x bretschneideri	Pbr007599.1	1	-
Rosa multiflora	Rmu_sc0005978.1_g000001.1	1	-
Rubus occidentalis	Ro06_G14215	1	-
Fragaria vesca	mrna30294.1	1	Ribosomal protein L1p/L10e family
Vitis vinifera	GSVIVT01033841001	1	Ribosomal protein L1p/L10e family

Gene Ontology

GO term	Description	Category
GO:0015934	large ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0003723	RNA binding	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02865	large subunit ribosomal protein L10Ae	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00687.17	Ribosomal_L1	19	212	1.40E-48

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	306.061
SRR5252888	dormant buds	no	dormant buds(0 month)	80.8481
SRR5252889	dormant buds	no	dormant buds(0 month)	78.0484
SRR5252886	dormant buds	no	dormant buds(1 months)	74.5437
SRR5252887	dormant buds	no	dormant buds(1 months)	67.4124
SRR5252884	dormant buds	no	dormant buds(2 months)	79.4855
SRR5252882	dormant buds	no	dormant buds(3 months)	95.487
SRR5252883	dormant buds	no	dormant buds(3 months)	95.7337
SRR5252880	dormant buds	no	dormant buds(4 months)	117.831
SRR5252881	dormant buds	no	dormant buds(4 months)	120.168
SRR5252878	bud break	no	bud break	110.717
SRR5252879	bud break	no	bud break	178.112
SRR3744766	flower	no	mature	57.2043
SRR3744767	flower	no	mature	55.8557
SRR3744768	flower	no	mature	56.9671
SRR6308190	stigmas	no	open flowers	58.461
SRR6308181	styles	no	open flowers	83.7613
SRR6308188	filaments	no	open flowers	168.62
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	36.0712
SRR6308192	pollen	no	open flowers	31.8322
SRR6308191	petals	no	open flowers	156.061
SRR6308194	sepals	no	open flowers	91.5018
SRR6308193	receptacles	no	open flowers	142.446
SRR6308189	ovaries	no	open flowers	113.805
SRR3384922	fruit	no	1 week after full bloom	182.393
SRR3384921	fruit	no	2 week after full bloom	175.827
SRR3384920	fruit	no	3 week after full bloom	136.81
SRR3384919	fruit	no	4 week after full bloom	143.757
SRR3384923	fruit	no	5 week after full bloom	107.886
SRR3384918	fruit	no	6 week after full bloom	105.238
SRR3384917	fruit	no	8 week after full bloom	111.648
SRR3384916	fruit	no	10 week after full bloom	93.0117
SRR3384915	fruit	no	12 week after full bloom	115.486
SRR3384914	fruit	no	14 week after full bloom	98.7372
SRR3384913	fruit	no	16 week after full bloom	102.413
SRR3384912	fruit	no	18 week after full bloom	88.8421
SRR3384911	fruit	no	19 week after full bloom	77.2353
SRR3384910	fruit	no	20 week after full bloom	64.3572
SRR768128	whole fruit	no	25 days post anthesis	106.05
SRR768129	whole fruit	no	35 days post anthesis	92.5898
SRR768130	whole fruit	no	60 days post anthesis	80.2987
SRR768131	whole fruit	no	87 days post anthesis	55.7165
SRR7343308	immature fruit flesh	no	immature	101.181
SRR7343309	immature fruit flesh	no	immature	120.133
SRR6320494	ripe fruit flesh	no	mature	44.9996
SRR5405143	ripe fruit peel	no	mature	85.5619
SRR6320572	ripe fruit peel	no	mature	45.8917
SRR7403504	fruit	uninfected	mature	50.7318
SRR7403506	fruit	uninfected	mature	50.0249
SRR7403507	fruit	uninfected	mature	49.0378
SRR7403500	fruit	infected with penicillium expansum	mature	53.1929
SRR7403501	fruit	infected with penicillium expansum	mature	63.4765
SRR7403508	fruit	infected with penicillium expansum	mature	57.8113
SRR7403502	fruit	infected with penicillium expansum	mature	46.0977
SRR7403503	fruit	infected with penicillium expansum	mature	44.8363
SRR7403505	fruit	infected with penicillium expansum	mature	39.7397
SRR1613973	Central seeds	no	20DAPF	297.743
SRR1613974	Central seeds	no	20DAPF	265.323
SRR1613975	Central seeds	no	20DAPF	273.71
SRR1613976	Lateral seeds	no	20DAPF	253.526
SRR1613977	Lateral seeds	no	20DAPF	273.55
SRR1613978	Lateral seeds	no	20DAPF	262.184
SRR3744786	stem	no	mature	65.9622
SRR3744787	stem	no	mature	66.5072
SRR3744772	stem	no	mature	65.7415
SRX765691	seedling shoot apex	no	4-6 week old seedling	160.413
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	146.863
SRR1089478	leaf	Virus-free	plantlets	77.3364
SRR1089477	leaf	ASGV-infected	plantlets	80.2199
SRR767660	leaf	uninfected	fully developed	95.571
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	74.13
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	111.41
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	179.775
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	73.3879
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	70.5826
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	78.3829
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	81.681
SRR6308182	young leaf	no	immature leaves	228.15
SRR3744769	leaf	no	mature	66.7438
SRR3744770	leaf	no	mature	65.3975
SRR3744771	leaf	no	mature	63.4474
SRR5405145	leaf	no	mature	41.2061
SRR6320561	leaf	no	mature	65.185