Gene detail

Detail information of MD14G1043500 Annotation

Gene ID	Annotation
MD14G1043500	ribosomal protein 5B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0337	plasmodesma elongation factor 1-alpha translation elongation factor activity translational elongation translation vacuole structural constituent of ribosome cytosolic large ribosomal subunit GTPase activity rRNA (adenine-N6 rRNA modification large subunit ribosomal protein L17e large subunit ribosomal protein L10Ae 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] small subunit ribosomal protein S5e calmodulin binding GTP binding nucleolus RNA binding cell fate specification

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1043500	mRNA	Chr14	4097624	4099466	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G37270.2	1	ATRPS5B;RPS5B\|ribosomal protein 5B
Arabidopsis thaliana	AT2G37270.1	1	ATRPS5B;RPS5B\|ribosomal protein 5B
Arabidopsis thaliana	AT3G11940.1	0.659	AML1;ATRPS5A;RPS5A\|ARABIDOPSIS MINUTE-LIKE 1;ribosomal protein 5A
Arabidopsis thaliana	AT3G11940.2	0.659	AML1;ATRPS5A;RPS5A\|ARABIDOPSIS MINUTE-LIKE 1;ribosomal protein 5A
Pyrus communis	PCP001725.1	1	-
Pyrus x bretschneideri	Pbr010305.1	1	-
Rosa multiflora	Rmu_sc0005991.1_g000014.1	1	-
Rubus occidentalis	Ro06_G22919	1	-
Rubus occidentalis	Ro02_G35026	1	-
Fragaria vesca	mrna18014.1	1	ribosomal protein 5B
Vitis vinifera	GSVIVT01026328001	1	ribosomal protein 5B
Vitis vinifera	GSVIVT01033419001	1	ribosomal protein 5B
Populus trichocarpa	Potri.006G197700.1	1	ribosomal protein 5B
Populus trichocarpa	Potri.016G063200.2	1	ribosomal protein 5B
Nicotiana benthamiana	Niben101Scf04288g01012.1	1	30S ribosomal protein S7
Nicotiana benthamiana	Niben101Scf00749g04008.1	0.969	30S ribosomal protein S7
Oryza sativa	LOC_Os01g01060.1	1	"40S ribosomal protein S5, putative, expressed"
Oryza sativa	LOC_Os04g16798.1	1	"chloroplast 30S ribosomal protein S7, putative, expressed"
Oryza sativa	LOC_Os04g16886.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os04g16712.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os04g16856.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os08g15246.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os07g25002.1	1	"chloroplast 30S ribosomal protein S7, putative, expressed"
Oryza sativa	LOC_Os10g21372.1	1	"chloroplast 30S ribosomal protein S7, putative"
Zea mays	GRMZM2G078985_P01	1	40S ribosomal protein S5;

Gene Ontology

GO term	Description	Category
GO:0015935	small ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0003723	RNA binding	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02989	small subunit ribosomal protein S5e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00177.17	Ribosomal_S7	63	208	5.70E-37

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	67.9568
SRR5252888	dormant buds	no	dormant buds(0 month)	20.8475
SRR5252889	dormant buds	no	dormant buds(0 month)	23.3179
SRR5252886	dormant buds	no	dormant buds(1 months)	17.3506
SRR5252887	dormant buds	no	dormant buds(1 months)	11.1612
SRR5252884	dormant buds	no	dormant buds(2 months)	17.0495
SRR5252882	dormant buds	no	dormant buds(3 months)	24.8724
SRR5252883	dormant buds	no	dormant buds(3 months)	19.3389
SRR5252880	dormant buds	no	dormant buds(4 months)	36.9757
SRR5252881	dormant buds	no	dormant buds(4 months)	40.4674
SRR5252878	bud break	no	bud break	28.845
SRR5252879	bud break	no	bud break	73.3963
SRR3744766	flower	no	mature	7.41086
SRR3744767	flower	no	mature	9.41808
SRR3744768	flower	no	mature	8.90719
SRR6308190	stigmas	no	open flowers	2.21172
SRR6308181	styles	no	open flowers	3.96188
SRR6308188	filaments	no	open flowers	25.0015
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.47037
SRR6308192	pollen	no	open flowers	1.5321
SRR6308191	petals	no	open flowers	26.363
SRR6308194	sepals	no	open flowers	13.103
SRR6308193	receptacles	no	open flowers	29.9681
SRR6308189	ovaries	no	open flowers	11.6728
SRR3384922	fruit	no	1 week after full bloom	26.3241
SRR3384921	fruit	no	2 week after full bloom	21.9287
SRR3384920	fruit	no	3 week after full bloom	20.2335
SRR3384919	fruit	no	4 week after full bloom	18.0519
SRR3384923	fruit	no	5 week after full bloom	13.5103
SRR3384918	fruit	no	6 week after full bloom	11.3081
SRR3384917	fruit	no	8 week after full bloom	15.5097
SRR3384916	fruit	no	10 week after full bloom	15.2703
SRR3384915	fruit	no	12 week after full bloom	19.1969
SRR3384914	fruit	no	14 week after full bloom	19.7134
SRR3384913	fruit	no	16 week after full bloom	9.88963
SRR3384912	fruit	no	18 week after full bloom	13.4506
SRR3384911	fruit	no	19 week after full bloom	5.28929
SRR3384910	fruit	no	20 week after full bloom	7.57567
SRR768128	whole fruit	no	25 days post anthesis	21.4876
SRR768129	whole fruit	no	35 days post anthesis	18.3352
SRR768130	whole fruit	no	60 days post anthesis	9.89049
SRR768131	whole fruit	no	87 days post anthesis	7.84707
SRR7343308	immature fruit flesh	no	immature	26.5752
SRR7343309	immature fruit flesh	no	immature	15.0753
SRR6320494	ripe fruit flesh	no	mature	4.74338
SRR5405143	ripe fruit peel	no	mature	5.65673
SRR6320572	ripe fruit peel	no	mature	12.1486
SRR7403504	fruit	uninfected	mature	4.82996
SRR7403506	fruit	uninfected	mature	5.03129
SRR7403507	fruit	uninfected	mature	4.71173
SRR7403500	fruit	infected with penicillium expansum	mature	17.5113
SRR7403501	fruit	infected with penicillium expansum	mature	18.0103
SRR7403508	fruit	infected with penicillium expansum	mature	16.5076
SRR7403502	fruit	infected with penicillium expansum	mature	16.2044
SRR7403503	fruit	infected with penicillium expansum	mature	16.8177
SRR7403505	fruit	infected with penicillium expansum	mature	13.8213
SRR1613973	Central seeds	no	20DAPF	43.5666
SRR1613974	Central seeds	no	20DAPF	41.5343
SRR1613975	Central seeds	no	20DAPF	40.6029
SRR1613976	Lateral seeds	no	20DAPF	34.2481
SRR1613977	Lateral seeds	no	20DAPF	37.7403
SRR1613978	Lateral seeds	no	20DAPF	37.1225
SRR3744786	stem	no	mature	8.71667
SRR3744787	stem	no	mature	9.7168
SRR3744772	stem	no	mature	8.78395
SRX765691	seedling shoot apex	no	4-6 week old seedling	45.8966
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	34.6163
SRR1089478	leaf	Virus-free	plantlets	9.93009
SRR1089477	leaf	ASGV-infected	plantlets	10.2105
SRR767660	leaf	uninfected	fully developed	7.71914
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	28.2615
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	10.1989
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	18.1387
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	31.945
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.04544
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	24.5116
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.16122
SRR6308182	young leaf	no	immature leaves	37.651
SRR3744769	leaf	no	mature	9.62322
SRR3744770	leaf	no	mature	9.18205
SRR3744771	leaf	no	mature	8.7115
SRR5405145	leaf	no	mature	5.37565
SRR6320561	leaf	no	mature	12.3088