Gene detail

Detail information of MD14G1077700 Annotation

Gene ID	Annotation
MD14G1077700	Calcium-binding EF-hand family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0436	ATP-dependent RNA helicase DBP3 [EC:3.6.4.13]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1077700	mRNA	Chr14	8847475	8849663	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP001016.1	1	-
Pyrus x bretschneideri	Pbr002060.1	1	-

Gene Ontology

GO term	Description	Category
GO:0005509	calcium ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.2	EF-hand_5	91	111	0.00074
PF13405.2	EF-hand_6	156	183	9.30E-07

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.608513
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.150286
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.23928
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.103178
SRR3744767	flower	no	mature	0
SRR3744768	flower	no	mature	0
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	5.60475
SRR6308193	receptacles	no	open flowers	0.319174
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.90162
SRR3384921	fruit	no	2 week after full bloom	0.365981
SRR3384920	fruit	no	3 week after full bloom	0.644504
SRR3384919	fruit	no	4 week after full bloom	0.595427
SRR3384923	fruit	no	5 week after full bloom	1.69874
SRR3384918	fruit	no	6 week after full bloom	3.67703
SRR3384917	fruit	no	8 week after full bloom	4.85366
SRR3384916	fruit	no	10 week after full bloom	3.74377
SRR3384915	fruit	no	12 week after full bloom	4.31303
SRR3384914	fruit	no	14 week after full bloom	7.34855
SRR3384913	fruit	no	16 week after full bloom	5.19322
SRR3384912	fruit	no	18 week after full bloom	7.62275
SRR3384911	fruit	no	19 week after full bloom	7.55083
SRR3384910	fruit	no	20 week after full bloom	5.25519
SRR768128	whole fruit	no	25 days post anthesis	0.944872
SRR768129	whole fruit	no	35 days post anthesis	0.29646
SRR768130	whole fruit	no	60 days post anthesis	2.98226
SRR768131	whole fruit	no	87 days post anthesis	2.99303
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.666624
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.810618
SRR7403506	fruit	uninfected	mature	0.592823
SRR7403507	fruit	uninfected	mature	0.938502
SRR7403500	fruit	infected with penicillium expansum	mature	0.16116
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.148881
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0333532
SRR1613974	Central seeds	no	20DAPF	0.114572
SRR1613975	Central seeds	no	20DAPF	0.0311099
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.0759431
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0.371644
SRR3744787	stem	no	mature	0.631167
SRR3744772	stem	no	mature	0.314738
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.130573
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.128425
SRR1089478	leaf	Virus-free	plantlets	3.65174
SRR1089477	leaf	ASGV-infected	plantlets	1.16637
SRR767660	leaf	uninfected	fully developed	7.18144
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.40431
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.33661
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	42.1855
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	43.2747
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.97018
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	9.13343
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.94308
SRR6308182	young leaf	no	immature leaves	0.535739
SRR3744769	leaf	no	mature	0.594324
SRR3744770	leaf	no	mature	0.114792
SRR3744771	leaf	no	mature	0.340355
SRR5405145	leaf	no	mature	24.5992
SRR6320561	leaf	no	mature	31.8664