Gene detail

Detail information of MD14G1079700 Annotation

Gene ID	Annotation
MD14G1079700	RNA polymerase transcriptional regulation mediator-related

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1079700	mRNA	Chr14	9097269	9100177	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	MED6
Epigenetic Regulators	MED6SUB

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G21350.1	1	MED6\|RNA polymerase transcriptional regulation mediator-related
Arabidopsis thaliana	AT3G21350.2	0.929	MED6\|RNA polymerase transcriptional regulation mediator-related
Prunus persica	Prupe.3G054900.1.p	1	RNA polymerase transcriptional regulation mediator-related
Pyrus communis	PCP002480.1	1	-
Pyrus x bretschneideri	Pbr034399.1	1	-
Rubus occidentalis	Ro06_G15348	1	-
Fragaria vesca	mrna22903.1	1	RNA polymerase transcriptional regulation mediator-related
Vitis vinifera	GSVIVT01016927001	1	RNA polymerase transcriptional regulation mediator-related
Solanum lycopersicum	Solyc12g044640.1.1	1	RNA polymerase transcriptional regulation mediator-related
Populus trichocarpa	Potri.017G154400.1	1	RNA polymerase transcriptional regulation mediator-related
Oryza sativa	LOC_Os06g11370.1	1	"mediator of RNA polymerase II transcription subunit 6, putative, expressed"
Zea mays	GRMZM2G017537_P01	1	RNA polymerase transcriptional regulation mediator-related

Gene Ontology

GO term	Description	Category
GO:0016592	mediator complex	cellular component
GO:0001104	RNA polymerase II transcription cofactor activity	molecular_function
GO:0006357	regulation of transcription from RNA polymerase II promoter	biological_process

KEGG

KO	Description	Enzyme
K15128	mediator of RNA polymerase II transcription subunit 6	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.68855
SRR5252888	dormant buds	no	dormant buds(0 month)	9.35971
SRR5252889	dormant buds	no	dormant buds(0 month)	6.60533
SRR5252886	dormant buds	no	dormant buds(1 months)	7.37978
SRR5252887	dormant buds	no	dormant buds(1 months)	6.97179
SRR5252884	dormant buds	no	dormant buds(2 months)	10.2061
SRR5252882	dormant buds	no	dormant buds(3 months)	10.7015
SRR5252883	dormant buds	no	dormant buds(3 months)	12.0413
SRR5252880	dormant buds	no	dormant buds(4 months)	6.73313
SRR5252881	dormant buds	no	dormant buds(4 months)	10.0506
SRR5252878	bud break	no	bud break	8.09393
SRR5252879	bud break	no	bud break	7.18023
SRR3744766	flower	no	mature	2.88739
SRR3744767	flower	no	mature	3.06437
SRR3744768	flower	no	mature	2.00411
SRR6308190	stigmas	no	open flowers	2.5379
SRR6308181	styles	no	open flowers	4.66225
SRR6308188	filaments	no	open flowers	4.22435
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.33495
SRR6308192	pollen	no	open flowers	16.5607
SRR6308191	petals	no	open flowers	2.19781
SRR6308194	sepals	no	open flowers	3.68052
SRR6308193	receptacles	no	open flowers	4.78768
SRR6308189	ovaries	no	open flowers	2.88322
SRR3384922	fruit	no	1 week after full bloom	2.17842
SRR3384921	fruit	no	2 week after full bloom	2.1222
SRR3384920	fruit	no	3 week after full bloom	1.5572
SRR3384919	fruit	no	4 week after full bloom	2.3977
SRR3384923	fruit	no	5 week after full bloom	1.64174
SRR3384918	fruit	no	6 week after full bloom	2.43679
SRR3384917	fruit	no	8 week after full bloom	3.07834
SRR3384916	fruit	no	10 week after full bloom	2.38037
SRR3384915	fruit	no	12 week after full bloom	3.94299
SRR3384914	fruit	no	14 week after full bloom	2.62227
SRR3384913	fruit	no	16 week after full bloom	1.67299
SRR3384912	fruit	no	18 week after full bloom	4.95158
SRR3384911	fruit	no	19 week after full bloom	3.35915
SRR3384910	fruit	no	20 week after full bloom	3.62775
SRR768128	whole fruit	no	25 days post anthesis	4.95874
SRR768129	whole fruit	no	35 days post anthesis	3.86912
SRR768130	whole fruit	no	60 days post anthesis	5.0454
SRR768131	whole fruit	no	87 days post anthesis	3.43603
SRR7343308	immature fruit flesh	no	immature	0.644644
SRR7343309	immature fruit flesh	no	immature	1.28824
SRR6320494	ripe fruit flesh	no	mature	3.0485
SRR5405143	ripe fruit peel	no	mature	1.08641
SRR6320572	ripe fruit peel	no	mature	2.60981
SRR7403504	fruit	uninfected	mature	5.96737
SRR7403506	fruit	uninfected	mature	4.45713
SRR7403507	fruit	uninfected	mature	5.59449
SRR7403500	fruit	infected with penicillium expansum	mature	2.4926
SRR7403501	fruit	infected with penicillium expansum	mature	4.39252
SRR7403508	fruit	infected with penicillium expansum	mature	2.33323
SRR7403502	fruit	infected with penicillium expansum	mature	3.09245
SRR7403503	fruit	infected with penicillium expansum	mature	3.02227
SRR7403505	fruit	infected with penicillium expansum	mature	2.06983
SRR1613973	Central seeds	no	20DAPF	12.3199
SRR1613974	Central seeds	no	20DAPF	12.408
SRR1613975	Central seeds	no	20DAPF	12.7547
SRR1613976	Lateral seeds	no	20DAPF	12.7202
SRR1613977	Lateral seeds	no	20DAPF	13.1997
SRR1613978	Lateral seeds	no	20DAPF	14.2774
SRR3744786	stem	no	mature	3.22762
SRR3744787	stem	no	mature	3.95851
SRR3744772	stem	no	mature	3.89731
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.46542
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.93432
SRR1089478	leaf	Virus-free	plantlets	6.02363
SRR1089477	leaf	ASGV-infected	plantlets	9.02269
SRR767660	leaf	uninfected	fully developed	10.1014
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	41.8465
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.3603
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	10.6188
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.10306
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.71066
SRR6308182	young leaf	no	immature leaves	2.9813
SRR3744769	leaf	no	mature	3.18121
SRR3744770	leaf	no	mature	2.87912
SRR3744771	leaf	no	mature	3.55605
SRR5405145	leaf	no	mature	5.57319
SRR6320561	leaf	no	mature	2.1633