Gene detail

Detail information of MD14G1083200 Annotation

Gene ID	Annotation
MD14G1083200	Calcium-binding EF-hand family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0376	alpha-1 oligosaccharide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1083200	mRNA	Chr14	9822296	9822958	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G10190.1	1	Calcium-binding EF-hand family protein
Prunus persica	Prupe.7G047300.1.p	1	Calcium-binding EF-hand family protein
Pyrus communis	PCP023105.1	1	-
Pyrus x bretschneideri	Pbr034024.1	1	-
Rosa multiflora	Rmu_sc0002939.1_g000021.1	1	-
Rubus occidentalis	Ro06_G25611	1	-
Fragaria vesca	mrna21916.1	1	Calcium-binding EF-hand family protein
Vitis vinifera	GSVIVT01033567001	1	Calcium-binding EF-hand family protein
Populus trichocarpa	Potri.006G043700.1	1	Calcium-binding EF-hand family protein
Nicotiana benthamiana	Niben101Scf00711g02008.1	1	Calcium-binding EF-hand family protein LENGTH=209
Oryza sativa	LOC_Os11g04560.1	0.841	"calmodulin-like protein 1, putative, expressed"
Oryza sativa	LOC_Os12g04360.1	1	"calmodulin-like protein 1, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0005509	calcium ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.2	EF-hand_7	84	137	4.50E-09
PF13499.2	EF-hand_7	155	216	4.80E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	78.7366
SRR5252888	dormant buds	no	dormant buds(0 month)	20.7144
SRR5252889	dormant buds	no	dormant buds(0 month)	31.0431
SRR5252886	dormant buds	no	dormant buds(1 months)	17.1247
SRR5252887	dormant buds	no	dormant buds(1 months)	26.6344
SRR5252884	dormant buds	no	dormant buds(2 months)	9.57041
SRR5252882	dormant buds	no	dormant buds(3 months)	22.0412
SRR5252883	dormant buds	no	dormant buds(3 months)	33.8959
SRR5252880	dormant buds	no	dormant buds(4 months)	14.1918
SRR5252881	dormant buds	no	dormant buds(4 months)	23.2347
SRR5252878	bud break	no	bud break	25.4438
SRR5252879	bud break	no	bud break	45.2607
SRR3744766	flower	no	mature	62.6178
SRR3744767	flower	no	mature	59.5504
SRR3744768	flower	no	mature	69.2613
SRR6308190	stigmas	no	open flowers	85.0917
SRR6308181	styles	no	open flowers	104.789
SRR6308188	filaments	no	open flowers	51.5023
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	19.0873
SRR6308192	pollen	no	open flowers	8.31359
SRR6308191	petals	no	open flowers	153.188
SRR6308194	sepals	no	open flowers	81.8309
SRR6308193	receptacles	no	open flowers	35.3871
SRR6308189	ovaries	no	open flowers	116.443
SRR3384922	fruit	no	1 week after full bloom	237.403
SRR3384921	fruit	no	2 week after full bloom	229.403
SRR3384920	fruit	no	3 week after full bloom	149.472
SRR3384919	fruit	no	4 week after full bloom	126.656
SRR3384923	fruit	no	5 week after full bloom	76.1167
SRR3384918	fruit	no	6 week after full bloom	73.0944
SRR3384917	fruit	no	8 week after full bloom	64.5276
SRR3384916	fruit	no	10 week after full bloom	36.2375
SRR3384915	fruit	no	12 week after full bloom	31.1668
SRR3384914	fruit	no	14 week after full bloom	33.4004
SRR3384913	fruit	no	16 week after full bloom	29.5051
SRR3384912	fruit	no	18 week after full bloom	13.4753
SRR3384911	fruit	no	19 week after full bloom	23.5472
SRR3384910	fruit	no	20 week after full bloom	8.59459
SRR768128	whole fruit	no	25 days post anthesis	55.1871
SRR768129	whole fruit	no	35 days post anthesis	57.3336
SRR768130	whole fruit	no	60 days post anthesis	46.0524
SRR768131	whole fruit	no	87 days post anthesis	10.4542
SRR7343308	immature fruit flesh	no	immature	52.3183
SRR7343309	immature fruit flesh	no	immature	86.9141
SRR6320494	ripe fruit flesh	no	mature	10.1521
SRR5405143	ripe fruit peel	no	mature	7.25639
SRR6320572	ripe fruit peel	no	mature	22.6231
SRR7403504	fruit	uninfected	mature	19.0063
SRR7403506	fruit	uninfected	mature	19.7865
SRR7403507	fruit	uninfected	mature	21.1898
SRR7403500	fruit	infected with penicillium expansum	mature	701.721
SRR7403501	fruit	infected with penicillium expansum	mature	638.115
SRR7403508	fruit	infected with penicillium expansum	mature	716.166
SRR7403502	fruit	infected with penicillium expansum	mature	473.03
SRR7403503	fruit	infected with penicillium expansum	mature	432.973
SRR7403505	fruit	infected with penicillium expansum	mature	458.359
SRR1613973	Central seeds	no	20DAPF	97.8061
SRR1613974	Central seeds	no	20DAPF	88.7647
SRR1613975	Central seeds	no	20DAPF	95.5611
SRR1613976	Lateral seeds	no	20DAPF	105.652
SRR1613977	Lateral seeds	no	20DAPF	103.471
SRR1613978	Lateral seeds	no	20DAPF	98.1034
SRR3744786	stem	no	mature	78.6489
SRR3744787	stem	no	mature	77.1372
SRR3744772	stem	no	mature	77.1658
SRX765691	seedling shoot apex	no	4-6 week old seedling	120.323
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	45.6611
SRR1089478	leaf	Virus-free	plantlets	256.666
SRR1089477	leaf	ASGV-infected	plantlets	266.027
SRR767660	leaf	uninfected	fully developed	75.5323
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	162.194
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	42.5071
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	259.569
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	181.012
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	305.886
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	285.772
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	145.585
SRR6308182	young leaf	no	immature leaves	35.695
SRR3744769	leaf	no	mature	80.2087
SRR3744770	leaf	no	mature	75.1477
SRR3744771	leaf	no	mature	76.5062
SRR5405145	leaf	no	mature	134.716
SRR6320561	leaf	no	mature	212.212