Gene detail

Detail information of MD14G1097400 Annotation

Gene ID	Annotation
MD14G1097400	PLATZ transcription factor family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1097400	mRNA	Chr14	14777643	14779599	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	PLATZ

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G27930.1	1	PLATZ transcription factor family protein
Prunus persica	Prupe.7G123100.1.p	1	PLATZ transcription factor family protein
Pyrus communis	PCP017636.1	1	-
Pyrus x bretschneideri	Pbr042495.1	1	-
Rubus occidentalis	Ro06_G19519	1	-
Fragaria vesca	mrna00954.1	1	PLATZ transcription factor family protein
Vitis vinifera	GSVIVT01033703001	1	PLATZ transcription factor family protein
Populus trichocarpa	Potri.006G119400.1	1	PLATZ transcription factor family protein
Nicotiana benthamiana	Niben101Scf07981g01015.1	1	PLATZ transcription factor family protein LENGTH=189
Nicotiana benthamiana	Niben101Scf02405g05018.1	0.921	PLATZ transcription factor family protein LENGTH=246
Oryza sativa	LOC_Os08g44620.1	1	"zinc-binding protein, putative, expressed"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.59257
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.707964
SRR5252886	dormant buds	no	dormant buds(1 months)	0.388161
SRR5252887	dormant buds	no	dormant buds(1 months)	0.412539
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.985247
SRR5252879	bud break	no	bud break	1.27462
SRR3744766	flower	no	mature	0.698072
SRR3744767	flower	no	mature	0.520346
SRR3744768	flower	no	mature	0.989673
SRR6308190	stigmas	no	open flowers	1.69098
SRR6308181	styles	no	open flowers	1.11706
SRR6308188	filaments	no	open flowers	3.69999
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.0195
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	3.15669
SRR6308194	sepals	no	open flowers	0.556339
SRR6308193	receptacles	no	open flowers	1.21997
SRR6308189	ovaries	no	open flowers	1.71154
SRR3384922	fruit	no	1 week after full bloom	0.463994
SRR3384921	fruit	no	2 week after full bloom	1.84156
SRR3384920	fruit	no	3 week after full bloom	3.31676
SRR3384919	fruit	no	4 week after full bloom	3.20038
SRR3384923	fruit	no	5 week after full bloom	3.36732
SRR3384918	fruit	no	6 week after full bloom	3.82061
SRR3384917	fruit	no	8 week after full bloom	3.12225
SRR3384916	fruit	no	10 week after full bloom	1.62242
SRR3384915	fruit	no	12 week after full bloom	1.27976
SRR3384914	fruit	no	14 week after full bloom	0.465443
SRR3384913	fruit	no	16 week after full bloom	0.182738
SRR3384912	fruit	no	18 week after full bloom	0.34298
SRR3384911	fruit	no	19 week after full bloom	0.246719
SRR3384910	fruit	no	20 week after full bloom	0.257565
SRR768128	whole fruit	no	25 days post anthesis	7.24537
SRR768129	whole fruit	no	35 days post anthesis	4.59028
SRR768130	whole fruit	no	60 days post anthesis	1.53921
SRR768131	whole fruit	no	87 days post anthesis	0.257461
SRR7343308	immature fruit flesh	no	immature	0.914446
SRR7343309	immature fruit flesh	no	immature	1.36954
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.528972
SRR1613974	Central seeds	no	20DAPF	0.742634
SRR1613975	Central seeds	no	20DAPF	0.686462
SRR1613976	Lateral seeds	no	20DAPF	1.01541
SRR1613977	Lateral seeds	no	20DAPF	0.733136
SRR1613978	Lateral seeds	no	20DAPF	0.962031
SRR3744786	stem	no	mature	1.14927
SRR3744787	stem	no	mature	0.888786
SRR3744772	stem	no	mature	0.815521
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.36285
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.07584
SRR1089478	leaf	Virus-free	plantlets	0.444392
SRR1089477	leaf	ASGV-infected	plantlets	0.574517
SRR767660	leaf	uninfected	fully developed	0.450534
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.324438
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.974563
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.191514
SRR6308182	young leaf	no	immature leaves	2.60727
SRR3744769	leaf	no	mature	0.366416
SRR3744770	leaf	no	mature	0.154848
SRR3744771	leaf	no	mature	0.381792
SRR5405145	leaf	no	mature	0.792807
SRR6320561	leaf	no	mature	0.387106