Gene detail

Detail information of MD14G1103700 Annotation

Gene ID	Annotation
MD14G1103700	transcription factor jumonji (jmjC) domain-containing protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0516	splicing factor U2AF 65 kDa subunit histone demethylase JARID1 [EC:1.14.11.-] SGS ARID

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1103700	mRNA	Chr14	15999174	16014561	-

Sequences

CDS:

MD14G1103700

CTCGGAATTCACACTCGCCAGTCTGAGGTTATCTACAAAAGGTAGTTAGTTATATGCATATAGGTTCTGCGTATATGTGTGGTGGTGTTGATGGGAAAGGGAAAACCCAGGGCTGTGGAGAAGGGAGTGGTAGGTCAAAATTTGAGTGTTACAGCATCTGGATCATTGAATATTCCATCTGCACCTGTGTATTACCCTAGTGAGGATGAATTTAGAGACCCTTTGGAGTATATTTATAAGATCAGGCCAGAGGCCGAGGCGTATGGGATTTGTAGGATAGTTCCGCCGAAGTGCTGGAAACCCCCATTTGCGTTGGATTTGGATTTGTTTACGTTTCCTACAAAGACGCAGGCCATTCACCAGCTTCAGGTGCGGCCTGCGTCTTGCGATTCCAAGACTTTTGAGTTGGAATACAGTAGGTTTTGGGAGGACCACTGTGGGAAGAAGTTGCGGAAGAGGGTGGTTTTTGAAGGGGAGGAGTTGGATTTGTGTAAATTATTTAATGCTGTGAAGCGGTATGGAGGATATGATAAGGTTGTCAAGGGGAAGAAGTGGGCGGAGGTTGCTCGTTTTGTGACGCCGCTGATAAAGATTTCGGAGTGCTCGAAGCACGTATTGTGTCAACTGTATCGAGACCATTTGTTTGATTATGAAAAGTATTATAACAAGCTGAACAAAGAGGGGGCTAGGAGATGTAAGAGGGTTATGCCTGTGGAAAAGAGTGGACAGAGTTTTGAATGTTCCAGCTCCAAAAGGAGGCGAGTCAATAATGGTGGTGAGAAAGTTAAGGTCGGTAAGGTAGAGAAGGAGGATGAGGAGCATGATCAGATATGTGAACAATGCAGAAGTGGTCTGCACGGGGAAGTGATGCTTTTGTGTGATAGGTGTAATAAGGGGTGGCACATTTATTGCCTGTCTCCTCCATTGAAACAGGTTCCGCCAGGGAATTGGTATTGTTTGGATTGCTTGAATTCTGACAAGGATAGTTTTGGCTTTGTTCCTGGTAAGCAGTTCTCGCTGGAAGTTTTTAGGCGTATGGCTAATCGCTCCAAGAGGAAATGGTTTGGGGCAGGATCTGCATCAAGGGTGCAAATAGAGAAAAAGTTTTGGGAGATTGTGGAGGGTTCAGTCGGTGAGGTGGAAGTTAAGTATGGCAGTGACTTGGATACTTCCATATATGGGAGTGGGTTTCCACGTGTAAATGACCAGAAACCAGAATCAGCTGAGGCCAAGATATGGGATGAGTACTGCAGTAGCCCATGGAATCTCAATAACTTGCCCAAATTGAAAGGATCAGTACTTCAAGCTGTTCATCATAACATTGCTGGTGTTATGGTTCCTTGGCTGTATGTTGGGATGTTGTTCTCATCTTTTTGCTGGCATTTTGAAGATCATTGTTTTTACTCAATGAATTATCACCACTGGGGAGAGCCAAAATGTTGGTACAGCGTCCCTGGTAGTGAAGCCAGTGCATTTGAGAAGGTGATGCGCAACAGTCTTCCTGATCTTTTTGATGCACAACCCGATTTACTCTTTCAGCTTGTCACCATGTTAAATCCATCTGTCTTGCAAGAGAATGGAGTTCCTGTATATAGTGTGCTACAGGAGCCTGGGAATTTTGTCATCACCTTCCCCAGATCTTACCATGGAGGCTTTAATCTTGGTTTGAACTGTGCAGAAGCTGTCAATTTTGCTCCTGCGGACTGGCTACCTCATGGTGGGTTTGGAGCAGGGCTGTATCAGCTTTATCACAAAACTGCCGTTCTGTCTCACGAGGAGCTTGTTTGTGTGCTAGCCAAGAGTGACTGTGACAGCAGAGTATCAACTTATTTGAAGAAAGAATTGACTAGAATCTACAATAAGGAAAAAACCTGGAGGGAGCGCCTTTGGAGGAAAGGGATCATCAGATCGTCCCTTATGTCCTCTCGGACATGCCCTGAGTATGTTGGTACCGAAGAGGATCCTACATGCATTATATGCCAACAGTATCTTTTTCTTTCTGCTGTTGTTTGTCGTTGTAGGCCATCTGCATTTGTATGTCTGGAGCATTGGGAACACCTTTGCGAATGCAAATCCAGAAGACTCCGTCTTTTATATCGTCATTCTCTGGCAGAGTTGCATGAATTGGTCCTCGAAATGGATAAACATGGTTTTGAGGAGACAACACAAAGTAGGACTATAAGAAGGCATATCTCATGCACTGATGAACCAACGGCTTTGACAAAAAAGGTCAAAGGGGGCCATGCCACTTTTGCTCAACTTGCAGAACAATGGCTTTTGCGCTCATGCAAGATTTCTCAGAATCCATTTTCAAGAGATGAGTATGTGTCTTTATTAAAAGAAGCTGAACAGTTTCTTTGGGCTGGCTCAGAGATGAATCCTGTGCGGGAAACAACCAAGAATTTGATCAGATTTCAGAAATGGGCTGAAGGTGTAAGAGATTGTCTATCTAAACTTGAAACTTGGTCATCTCATCATGGAAACAATATCGAGAAAGTTCACTTGGATTATATCAATGAGTTGCTGAGTTTTGATGCGGTGCCCTGTTACGAGACTGGGCATCATAATTTGAAGGGCTATGCAGAAAAGGCAAAAATGTTGATACAGGAAATTGAATCTGCTATGTCATCATGCCTAAAGATATCGGAGTTGAAATTGTTGTATTCTAGAGCCTGTGAGCTTCCAGTCTATGTGAAAGAAAGTGAAAATTTACTACAAAAAATTTCATCTGCAGAGGTCTTGATGGAAGGCATAAGAAAATGTATCTCAGAGACACGTACTGCAGCAATTGGGATTGATGTTGTTTACAATTTGAAATCAGAGATTTCAGAGCTCCAAGTTGAACTCCCAGACATGGATAGGCTTTCAGATCTATTAAGGACGGCTGAATCATGGCGTGCTCGATGTGGTGAAATTTTGAAAGGTCCTATTAGCCTTGAGGATGTTGAGGCGCTTCTGAAACAATTGGATGGTTTTACTGTAAACACACCAGAGCTGAAGCTTCTGAAGCAGTACCACATTGATACAGTTTCTTGGATTTCTCGTCTTAATGCTGTTCTTGTGAACATTCACAAAAGGGAGGATCAAACTAATGTAGTTAATGAGTTAATGCTCATATTAACAGATGGAGCATCTTTGAAAATTAAAGTTGATCAGTTGTCTATCGTAGAGTTTGAGTTGAAGAAGGCTCAGTGCAGGGAAAAGGCGCTGAGGATGCGAGATACTAAATTGTCTCTGGACTTCATTCAAGAAGTGATGATGGAGGCAAGAATGTTACATGTTGAGGGGGAGAAGTTATTTGTTGATATGTCTGAAGTGTTAGCTGTTGCCATGCTGTGGGAGGAAAGAGCGAAATATATCCTTGCACACAAGGCTCAGATATCTGACTTTGAGGATGTTATCAGGAGTTCGGAAGACATACATGTGCATTTATCTTCTCTCCATGATGTCAAGGATGCACTATCAAAGGCTAAGATCTGGTTGAGGAAGTCAAAGCCATTTTTAATGACTTCTCCTGTGGTATCTGTTTCAAGTTCTTTGCTGAATGTCGACACCTTGAAGGAATTAGTTTCTGAGTCAAAGCCTCTGAAGGTTTCTTTGAAAGAAATAAGGATGCTTGAGACTGTTTTGATGAACTGTAAGGAATGGGAGAATGGCGCTTGCTGTCTACTGCAAGATACAAGGTGCCTATTTGATATGAGGATTGTTGATGATGGAACAAGAGATGGTCTTCTTTCTAAGATTGAACATCTAATTGCAAGAATCAAATCCATGGGAAGCACTGGTTTATCTCTTTCCTTTGACTTTGGCGAGCTTGTGAAACTTAAGGAGGCTTGTTCTGTGCTGCAATGGTGTAAGAAGGCTCTTTCTTTCAGCATTGGAGTTCCTCCCCTTGAGGATGTTGAAAATTTGGCGAGTGCTGCAGAAAATTTATGTGGTACATTTGCCCCTAGTGCATTGTGGGGCTCGTTGGTTGAAGGGCTGAAATGGCTTGAGCATGCTACAAAGGTTATTTCTGCATCATGCAATTCTAAAAGATGCACTTTAAGTGAAGCTGAAGAAGTTCTTTCTAAATCTCAGAGTATCAGTGTCTCCTTCCCATTGATGGTTGGTCAACTTGAATGTGCTATTCAGAAACACATGTCCTGGCTTGAGCAAGTGCATCAACTTTTCAGCCTAAGGCCAGGAGAACGATCTTGGTCTCTAACATTACAGCTAAAGGAACTTGGAGTTTCTGCTGCTTTCAGTTGCACAGAACTAGATTTGATTGTATCTGAAGTTGAAAGGGTTGAGAGTTGGAAACAACAGTGCATGGATATTTTCAGGATAGTAGTTGGAGATGATAATTCATTGCTTGGCGGTTTAGAAAAGATAGGACAGACTCTAAAGAGATGTATACACATATATGAGAAACCACATGGCTTGAAAGAGAGTAGTTCTTTTGCTTGCTGCTCCAGTGGTTCTCTGGATCAGGAATTTCTCACTTGTTCTTCATGCAAGGACTGCTACCATTTGCGGTGTCTAGGGTCTTCCATGGTAGGTGGAAAACATGCAGAATATGAATGCCCATGTTGCCGATATCTGGTATCTGGAACTTCTTCTCGAAGTGGGCTCAGTACTCTGAAACTTGGTGGGATGCGTCCAGAACTTCAAAAAATTATTGAACATTTATCTGGTGAAGAAGACTTCTGTGTTTGTATTAAAGAAAGAGATGTACTGAAAGAAGTTTTGAAGCAAGCTCTAGCATGCAAATCTCGCTTGACAGAATTAGTGGATTTTGCATTAGCTTATTCTGATAAGGATCTCAGTGTGCTCGTTGAAAAACTAACAACAGCTTTAAAGGCCAGAGAAATGCAGGGTGTGCATGATCATGAAGGTGATATCAACCTTATGTTGGCTTTATCAAGATACTCATGGAAAGTCAGAGTCAATAGGTTATTGGAGGGTTCACAAAAGCCCACAATCCAACAGGTTCAGCAGCAGTTAAAAGAGGGAGCTGCCTTGAACATTCCGCCTTCGGATTATTATTGGCAGAAACTTACAGAAGTGAGGATTATTGGTTTGCAGTGGGCAGATACTGCTAAGAAGGTTGCTGCCGATTCTGGGGCTCTCCCCTTGGATAAAGTTTTTGAACTTGTTTCGGAGGGTGAAAATTTGCCTGTTCGTCTAGAGAAGGAACTTAAGTTGTTGAAAGCTCGGAGTATGCTTTATTGCATTTGCCGAAAGCCGTATGATCAACGAGCAATGATTGCGTGTGACCAATGTAATGAGTGGTATCACTTTGATTGCATTAAATTACGTTCCACACCAAAGGTTTACATATGCCCTGCATGTCAGCCTCTAGGAGAAGAGTTGTCTTGTGAACCCGCGGTGGATCAAGAGAGATGTACTGATGCGAAATCTGTAGAGCCCAAAACGCCCTCTCCTACGCATGCAAAGTGCAGGACGAACCCAAAGAAGGCGGAGTCCGGTCTAGCACAAAAGAACCCCAACAATGTTTATAGGTGTTCTAGCGGGATAGAACGTTTATGGTGGCGAAATCGGAAACCTTTCAGAAGGGCGGCTAAACGACGTGCCAAGCTTGATAGTCTCTCTCTGTTTTCTCATTTGGAAGGGTGAAACGTTAAAAAGAAAATTGTTTGTAGGCCATCATTTAATTTATTCAATTGATTACCATGATTTCAGCTCACGTAGATGGTCCTAAATTTTAATTTCTTGAGCTATATGACGAGTTTTCCCCTTTGTGTTTTTTCCGCCCTGGAAATGTTTCTGAAGTTATAAATGCAACTTTCAGTTGTATGGAGTAAAGCAGCCCCTTTCACACGTTTTTTAGCATCTCATGTTTT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID
Epigenetic Regulators	JMJ

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G63490.1	1	transcription factor jumonji (jmjC) domain-containing protein
Prunus persica	Prupe.5G099000.2.p	1	transcription factor jumonji (jmjC) domain-containing protein
Prunus persica	Prupe.5G099000.4.p	1	transcription factor jumonji (jmjC) domain-containing protein
Prunus persica	Prupe.5G099000.3.p	1	transcription factor jumonji (jmjC) domain-containing protein
Prunus persica	Prupe.5G099000.1.p	1	transcription factor jumonji (jmjC) domain-containing protein
Pyrus communis	PCP021657.1	1	-
Pyrus x bretschneideri	Pbr005076.1	1	-
Pyrus x bretschneideri	Pbr005069.1	1	-
Rubus occidentalis	Ro05_G17892	1	-
Fragaria vesca	mrna32474.1	1	transcription factor jumonji (jmjC) domain-containing protein
Vitis vinifera	GSVIVT01019761001	1	transcription factor jumonji (jmjC) domain-containing protein
Populus trichocarpa	Potri.003G126600.1	1	transcription factor jumonji (jmjC) domain-containing protein
Nicotiana benthamiana	Niben101Scf05417g02007.1	1	Lysine-specific demethylase 4A
Zea mays	GRMZM2G466270_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0005634	nucleus	cellular component
GO:0055114	oxidation-reduction process	biological_process
GO:0005515	protein binding	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K11446	histone demethylase JARID1	EC:1.14.11.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.17	ARID	103	188	2.40E-10
PF00628.25	PHD	247	294	3.70E-09
PF02373.18	JmjC	418	534	1.90E-42
PF02928.12	zf-C5HC2	627	679	2.40E-13
PF00628.25	PHD	1707	1750	2.10E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.90609
SRR5252888	dormant buds	no	dormant buds(0 month)	16.5845
SRR5252889	dormant buds	no	dormant buds(0 month)	16.6628
SRR5252886	dormant buds	no	dormant buds(1 months)	15.0766
SRR5252887	dormant buds	no	dormant buds(1 months)	15.7405
SRR5252884	dormant buds	no	dormant buds(2 months)	22.8498
SRR5252882	dormant buds	no	dormant buds(3 months)	22.6905
SRR5252883	dormant buds	no	dormant buds(3 months)	22.2866
SRR5252880	dormant buds	no	dormant buds(4 months)	22.0799
SRR5252881	dormant buds	no	dormant buds(4 months)	22.4524
SRR5252878	bud break	no	bud break	13.8542
SRR5252879	bud break	no	bud break	11.3972
SRR3744766	flower	no	mature	7.9605
SRR3744767	flower	no	mature	8.93416
SRR3744768	flower	no	mature	8.44256
SRR6308190	stigmas	no	open flowers	5.8805
SRR6308181	styles	no	open flowers	5.77579
SRR6308188	filaments	no	open flowers	5.58423
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	4.16922
SRR6308192	pollen	no	open flowers	1.37797
SRR6308191	petals	no	open flowers	8.99158
SRR6308194	sepals	no	open flowers	8.17519
SRR6308193	receptacles	no	open flowers	5.48939
SRR6308189	ovaries	no	open flowers	5.39911
SRR3384922	fruit	no	1 week after full bloom	3.93762
SRR3384921	fruit	no	2 week after full bloom	4.42009
SRR3384920	fruit	no	3 week after full bloom	3.67715
SRR3384919	fruit	no	4 week after full bloom	2.94185
SRR3384923	fruit	no	5 week after full bloom	2.14267
SRR3384918	fruit	no	6 week after full bloom	2.59533
SRR3384917	fruit	no	8 week after full bloom	2.7121
SRR3384916	fruit	no	10 week after full bloom	2.58449
SRR3384915	fruit	no	12 week after full bloom	2.63284
SRR3384914	fruit	no	14 week after full bloom	2.76627
SRR3384913	fruit	no	16 week after full bloom	2.44365
SRR3384912	fruit	no	18 week after full bloom	2.63135
SRR3384911	fruit	no	19 week after full bloom	2.25589
SRR3384910	fruit	no	20 week after full bloom	2.51697
SRR768128	whole fruit	no	25 days post anthesis	5.1391
SRR768129	whole fruit	no	35 days post anthesis	2.90086
SRR768130	whole fruit	no	60 days post anthesis	2.15176
SRR768131	whole fruit	no	87 days post anthesis	5.52456
SRR7343308	immature fruit flesh	no	immature	6.3363
SRR7343309	immature fruit flesh	no	immature	4.60131
SRR6320494	ripe fruit flesh	no	mature	4.29973
SRR5405143	ripe fruit peel	no	mature	7.56469
SRR6320572	ripe fruit peel	no	mature	4.35747
SRR7403504	fruit	uninfected	mature	3.52699
SRR7403506	fruit	uninfected	mature	3.69457
SRR7403507	fruit	uninfected	mature	3.7296
SRR7403500	fruit	infected with penicillium expansum	mature	1.81169
SRR7403501	fruit	infected with penicillium expansum	mature	2.17911
SRR7403508	fruit	infected with penicillium expansum	mature	1.42809
SRR7403502	fruit	infected with penicillium expansum	mature	1.37227
SRR7403503	fruit	infected with penicillium expansum	mature	1.55033
SRR7403505	fruit	infected with penicillium expansum	mature	1.64694
SRR1613973	Central seeds	no	20DAPF	4.07405
SRR1613974	Central seeds	no	20DAPF	4.7588
SRR1613975	Central seeds	no	20DAPF	3.63676
SRR1613976	Lateral seeds	no	20DAPF	3.51312
SRR1613977	Lateral seeds	no	20DAPF	3.29746
SRR1613978	Lateral seeds	no	20DAPF	3.8069
SRR3744786	stem	no	mature	10.5002
SRR3744787	stem	no	mature	11.145
SRR3744772	stem	no	mature	11.9212
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.28
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.85167
SRR1089478	leaf	Virus-free	plantlets	5.5869
SRR1089477	leaf	ASGV-infected	plantlets	4.4331
SRR767660	leaf	uninfected	fully developed	2.26347
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.73002
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.94471
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.008
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.27436
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.82089
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.78189
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.61992
SRR6308182	young leaf	no	immature leaves	6.19895
SRR3744769	leaf	no	mature	11.2955
SRR3744770	leaf	no	mature	12.8569
SRR3744771	leaf	no	mature	12.0709
SRR5405145	leaf	no	mature	10.4134
SRR6320561	leaf	no	mature	5.6347