Gene detail

Detail information of MD14G1179700 Annotation

Gene ID	Annotation
MD14G1179700	SufE/NifU family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1179700	mRNA	Chr14	27244449	27246583	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G22220.1	1	ATISU1;ISU1\|SufE/NifU family protein
Pyrus communis	PCP025942.1	1	-
Pyrus x bretschneideri	Pbr001937.2	1	-
Rosa multiflora	Rmu_sc0012783.1_g000005.1	1	-
Rubus occidentalis	Ro05_G12169	1	-
Fragaria vesca	mrna32190.1	1	SufE/NifU family protein
Vitis vinifera	GSVIVT01013764001	1	SufE/NifU family protein
Solanum lycopersicum	Solyc03g112900.2.1	1	SufE/NifU family protein
Populus trichocarpa	Potri.015G077500.1	1	SufE/NifU family protein
Nicotiana benthamiana	Niben101Scf03939g05009.1	1	Iron-sulfur cluster assembly scaffold protein IscU
Oryza sativa	LOC_Os01g47340.1	1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"
Oryza sativa	LOC_Os05g49300.1	1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"
Zea mays	GRMZM2G064336_P01	1	NifU-like N-terminal domain-containing protein; NifU-like domain-containing protein;

Gene Ontology

GO term	Description	Category
GO:0005506	iron ion binding	molecular_function
GO:0016226	iron-sulfur cluster assembly	biological_process
GO:0051536	iron-sulfur cluster binding	molecular_function

KEGG

KO	Description	Enzyme
K22068	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	95.245
SRR5252888	dormant buds	no	dormant buds(0 month)	89.4704
SRR5252889	dormant buds	no	dormant buds(0 month)	96.4947
SRR5252886	dormant buds	no	dormant buds(1 months)	106.415
SRR5252887	dormant buds	no	dormant buds(1 months)	135.026
SRR5252884	dormant buds	no	dormant buds(2 months)	184.099
SRR5252882	dormant buds	no	dormant buds(3 months)	138.841
SRR5252883	dormant buds	no	dormant buds(3 months)	246.631
SRR5252880	dormant buds	no	dormant buds(4 months)	56.3685
SRR5252881	dormant buds	no	dormant buds(4 months)	79.7442
SRR5252878	bud break	no	bud break	22.4579
SRR5252879	bud break	no	bud break	11.5461
SRR3744766	flower	no	mature	41.4074
SRR3744767	flower	no	mature	41.4409
SRR3744768	flower	no	mature	42.5095
SRR6308190	stigmas	no	open flowers	101.413
SRR6308181	styles	no	open flowers	109.061
SRR6308188	filaments	no	open flowers	54.0696
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	111.741
SRR6308192	pollen	no	open flowers	446.159
SRR6308191	petals	no	open flowers	66.4494
SRR6308194	sepals	no	open flowers	78.8488
SRR6308193	receptacles	no	open flowers	86.1526
SRR6308189	ovaries	no	open flowers	79.3998
SRR3384922	fruit	no	1 week after full bloom	93.3672
SRR3384921	fruit	no	2 week after full bloom	38.7187
SRR3384920	fruit	no	3 week after full bloom	46.923
SRR3384919	fruit	no	4 week after full bloom	38.9472
SRR3384923	fruit	no	5 week after full bloom	69.4069
SRR3384918	fruit	no	6 week after full bloom	52.7046
SRR3384917	fruit	no	8 week after full bloom	74.7977
SRR3384916	fruit	no	10 week after full bloom	54.8884
SRR3384915	fruit	no	12 week after full bloom	105.023
SRR3384914	fruit	no	14 week after full bloom	83.338
SRR3384913	fruit	no	16 week after full bloom	118.835
SRR3384912	fruit	no	18 week after full bloom	97.1274
SRR3384911	fruit	no	19 week after full bloom	160.34
SRR3384910	fruit	no	20 week after full bloom	155.406
SRR768128	whole fruit	no	25 days post anthesis	22.7182
SRR768129	whole fruit	no	35 days post anthesis	19.7557
SRR768130	whole fruit	no	60 days post anthesis	33.9716
SRR768131	whole fruit	no	87 days post anthesis	33.4018
SRR7343308	immature fruit flesh	no	immature	39.2513
SRR7343309	immature fruit flesh	no	immature	51.1405
SRR6320494	ripe fruit flesh	no	mature	156.429
SRR5405143	ripe fruit peel	no	mature	54.8858
SRR6320572	ripe fruit peel	no	mature	65.7628
SRR7403504	fruit	uninfected	mature	97.7714
SRR7403506	fruit	uninfected	mature	104.856
SRR7403507	fruit	uninfected	mature	108.469
SRR7403500	fruit	infected with penicillium expansum	mature	28.4901
SRR7403501	fruit	infected with penicillium expansum	mature	31.8622
SRR7403508	fruit	infected with penicillium expansum	mature	26.2085
SRR7403502	fruit	infected with penicillium expansum	mature	28.3454
SRR7403503	fruit	infected with penicillium expansum	mature	26.8279
SRR7403505	fruit	infected with penicillium expansum	mature	29.601
SRR1613973	Central seeds	no	20DAPF	54.1061
SRR1613974	Central seeds	no	20DAPF	53.593
SRR1613975	Central seeds	no	20DAPF	56.6391
SRR1613976	Lateral seeds	no	20DAPF	57.842
SRR1613977	Lateral seeds	no	20DAPF	61.3546
SRR1613978	Lateral seeds	no	20DAPF	52.1964
SRR3744786	stem	no	mature	29.337
SRR3744787	stem	no	mature	32.038
SRR3744772	stem	no	mature	27.8641
SRX765691	seedling shoot apex	no	4-6 week old seedling	13.8856
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	10.4005
SRR1089478	leaf	Virus-free	plantlets	42.2506
SRR1089477	leaf	ASGV-infected	plantlets	53.8623
SRR767660	leaf	uninfected	fully developed	77.0723
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	83.5431
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	55.4572
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	91.413
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	25.5034
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	68.7326
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	66.5788
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	70.7559
SRR6308182	young leaf	no	immature leaves	14.8315
SRR3744769	leaf	no	mature	48.916
SRR3744770	leaf	no	mature	46.1467
SRR3744771	leaf	no	mature	49.447
SRR5405145	leaf	no	mature	115.213
SRR6320561	leaf	no	mature	112.327