Gene detail

Detail information of MD14G1184800 Annotation

Gene ID	Annotation
MD14G1184800	BAH domain

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0605	pre-mRNA-splicing factor CWC22 20S proteasome subunit alpha 4 [EC:3.4.25.1] IWS1

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1184800	mRNA	Chr14	27714970	27722567	-

Sequences

CDS:

MD14G1184800

GCTTTGCTCTCGCTACCAAGTACACCTTTCCCTTTTGCCGTCTGGCTCTTTCTCTACGACTTTCTCTCTCTGAAGTAGATCGAAAGCCGGCTCGAAATCGGGACTTCTTGTTGGATCTGACCTTCAATTAGATCGGGACTTGTTGTCTGGGATCCTAGAATCATCGCAATTCGATTTGGATTTCGGAGTTTCTGTGCGCTCGGATTCGTTTGGGGGGCAAAATTAGGGTTTCATTTCGGGGGAAGCAGTGAATCCGGGGCTTCGTTGAGGGCGGATGGGCGGAGAGGTGTGGAAAAGGAGGGGTTTTGGCGGGAATTGAGGGGCGAGATTGATGGTCTTTGTTGGAATTGAAGGAGGGATCGCGGTAGGGATTGGGGAAAATGCAAGGCTATGCATGGGAGGGGAAGTGAGGAGAGGAAACGGAGTTGGCACATGTTGAAAGTCCCCACGCGTGTATGCGTGGCCAATGGTTCTTCTTCATCACCCTCGTCTTTACCCAATTCGTTTTTCAAGGACGGGCGTAAGATCAGTGTTGGCGATTGTGCTCTTTTCAAACCACCCCAGGATTCTCCACCCTTCATTGGAATAATTCGTTGTGTGACTACAGGCAGAGAGAAGAAGTTAAAATTAGGTGTTAATTGGCTTTATCGACCTTCTGAAATAAAGCTTGGCAAAGGCATCTTGTTGGATGCTGCGCTGAATGAAATTTTTTATTCCTTTCATAAGGATGAGATACCTGCCGCATCGTTACTTCATCCGTGTAAAGTCGCGTTCCTTCCTAAAGGTGTTGATCTTCCGTCAGGGATTTCATCTTTTGTGTGCCGGCGTGTTTATGACATCACAAATAATTGTTTATGGTGGCTAACTGATCAGGACTTTATTAATGAGCGACAAGAGGAAGTAGATCAATTGTTGTATAAAACTCAAGTAGAAATGCATGCAACTGTGCAGTCTGGTGGCCGATCCCCAAAACCATTGAATGGTCCAACATCAGCATCACAGTTAAAAGTTGTGTCAGATGGTGTCCAGAATAGTGGCTCATCTTTTTCCTCTTTAGTTAAGGGGAAGAAAAGGGAGCGGGGAGATCAAGGATCTGAGCCTGTCAAACGAGAACGCACTATGAAAACAGATTATGGGGATTCTGGCAGCTTTAGACAGGAAACCACTTTAAAATCTGAAATTGCCAAAATAACAGAAAAAGGAGGCCTTTTAGATTCTGAAGGGGTTGAGAAATTGCTGCAGCTCATGATACCTGATGAAAATGAGAAAAAAATAGACTTGGCTGGCCGGTTAATGCTTGCTAATGTCATAGCAGCCACAGATAAATTTGATTGCCTTAGTCAATTTGTACTCAAGGGTGTGCCAGTATTCGATGAATGGATCCAAGAGGTTGGACATAAAGGGAAGATAGGTGATGGGAATGGACCCAAAGATAGCGATAAATCTATTGAGGAGTTTCTCTTGGTTTTACTTCGGGCACTGGATAAGCTGCCTGTTAATCTTGAAGCTCTGCAAATGTGTAACATTGGAAAGTCTGTAAATCACTTACGGACGCATAAGAACTTGGAAATCCAGAAGAAAGTAAGAAGCTTAGTTGATAAATGGAAGAAACGAGTTGAAGCTGAAATGGATGCAAAGTCTAATTCAAATGCGGCTGTCTCCTGGTCTGCAAGACCACGCTTCCCAGAAGTTTCTCATGGTGGAAACAGGCATTCTGGTGGATCTGTTGATGTTGCCGTGAAGAGCTCAGTCACACAGCTCTCCATATCCAAATCTGCTTCAGTTAAGCTTGTCCATGGAGATGGTATTACCAAATCTGCTTCAGTATCACCGGGATCTTTGAAATCAGTTCCCTCACCAGTGTCAGCAAGTTCTAACTTAAAAGATGGACTGCCTCGAGTTGTTGCTGTTGGCGTCACAGTTGATCTTCCTTCGACAACTCCAAGGGATGAGAAAAGTAGCAGTTCTAGTCAATCTCACAACAACAGTCAGTCGTGTTCGAATGATCATGCAAGAACTGGAGGTATTTCTGGGAAAGAGGATGCGAGGAGCTCTACTGCTGGTTCAATGAATGTTAAGGTATCAGGTGGCTCTTCCCGACCTCGGAAATCAACAAATGGCTTCCCAGGCTCTGCTCTTTCTGTAGTTCAAAGGGAAACTTTGTCAAGCAGAAGTTCATCTTTGCACAAGAATCCAGTTCCAGAAAAATCATCACAGCCTGGATTGACGAGTGAAAAGGTACTAGATGGACCTTCTGCTGAGGGAAATGGACCCAAGTTGATTGTTAAGATTCCAAATTGTGGTCGCAGTCCTGCACAAAGTGGCAGTGGAGGTTCGTCTGAAGATCCTTTAAATACTATTAGCAGAGCTGCTTCTCCCATGCAAAAGGTTGAAGCTTATCGAGCCACTGTTACCTCAGATGTGAACAACGAATCATGGCAAAGTAATGATTTCAAGGATGTACTGACTGGATCGGATGAGGGTGATGGATCCCCGGCTGCTGTTACTGATGAAGAGCATGATAGGCCCGGTGACGACTCTAAGAAGATTGCCGAAGTCCCAAAAGCTGCTTCCTCGTCATCTGGGAACGAAAAGTCGGGGAATTTGCAGGATGCTTCTTTCAGCTCTATACATCTTGGTATGAATCTGCTTGCTAGTGTTGCTGGAGAGATGTCTAAATCTGAATCCCCAACTGATTCTCCTCAAAGGTCTACCCCGGTTTCTGAGTATCTCTGCAAAGGCACTGATCCCAGAGTCAAATCACCTCCAGTTGATGAGCTTGCTCGAGATGAAAATCAGTCTAATGATGTCGCTGATGATGAATGTGAGAACCACGGTGTTGCATTCACTACTTCTGGGGCTAAGAATGGGGTTGTCCAATCTTTTTCTTCCCTGCCTGAACAGTCTTCTGTAGCAGAGGACACTGGAAATCTATGCTCTTCAAATAGAAGTTTTCATCATTCTGCAGAACCCACCCCAGAAAGCAAAGAAAAATCTATGGAAGTTACTCTAGCTCCTTTTACTGCTTCCCCTCCTAGTACAGTTGAGAAAGCTATGGACGGTGAAGGAGTACCTCTTCAAGACAAAAAGGTGGTTGGTGGAGTGAGTGCTGATGTCATTTCAGAAAATAAGGTCAGTGATGTTAGTTCGAGGGTAGTAGTGGGGAATGAAGCCATTGAAGAACATTCCTTGCACCCAGAGTTTGATGTTGATGGTATGATAAAAACTTCAAGTTATGAAGGGAGTGTACATACGGAGGAGAAACCATCTAGTTTAAAGAAGCATTCTGAGTTGGTGAATGGAACCTGTGAAGAAGCGCTACTTTCTTCTAGTTTTCGTAAAGGTTTGATCTCAGAAAAAGTCAGTGAACTGAAGGCTGAAACAACTGATGAAAAGGATGGCCCGAGTTATTGTAATCAGGCTGAAAATCCCAGAATTGATTCAGAAAGTAATGGTCCTGGCACTTTGAAAACAGAAAATAATGATCTTACAACTCCTGGGAGTCAAGCTCTAGGTGGCTCTAGTTCCGCTGTTACTGATAATACCGGTGAAGATGTAGAGGAGAATATGAAAACTAAAGAAACTAATGATCAAGTTGTTGAACCTGGTATTAGGAAGGTGTCGCCTGATATTCCCATGCAGGAAGTAGAAGAATATTTGAGGCCGAAGAGTTCTAAATTAACCAACATGGAAGCAGAAGAAGCTGAGGAATGTACATCTACAACTGCAGATGCTTCTTCTGTGTCTGCTGCAGGGGCAGCAGTTGTGGATGCAAAAGTGGAGTTTGATTTGAACGAAGGCTTTAATGCCGATGATGGGAAATATGCAGAGCCAAATAATTTGACAGTACCTGGATGTTCAACTGCTCTTCGGTTGATTAGCCCGGTACCTTTTGCTGTTTCTTCTGTGTCTAGTGGCCTTCCTGCTTCAGTTTCAGTTCCTGCTGCAGCAAAAGGGCCGTGTGTTCCACCAGATGACCTGTTGAAGAGTAAAGGGGCGGAGGTTGGTTGGAGGGGATCAGCAGCTACAAGCGCGTTCCGGCCAGCTGAACCCAGAAAAGTTCAAGAATTTCCACTGGGTACAAGTATTTCAGTTCCCGAGCCTACACCGAGCAAGAAAGGACGCCCAGCTTTAGACATTGACTTGAACATACCCGATGAAAGAATTCTGGAGGATATGGCTTCTCAAAGTTCTGCTCAAGAGACATCTTCTATTGCTGACACAATAAACAATAAAGCTTTTGCGGGTGACCAGTCGATGAGTATTGCACCCGTTCACAGTTCTGGAGGTCTTGATCTTGACTTGAATCAAGTTGATGAGGCTTCTGAAATGGGCAATTATCCATTGAGCAATAGCCATCGAATGGATAACCAAATCCTATCAATAAAATCAGGTGGACCTGTCAATGGAGAAGTTAGTCTTTGTAGGGATTTTGATTTGAATAACGGACCTGTTGTTGATGAGTTGTGTGCTGAACCGGCAGTGTTTAGTCAGCATGCCATGAGCAGTGTACCATCTCAACCACCTGTATCTGGTTTTAGGATGAACAATACAGAAGTAGGGAATTTCTCATCATGGTTTCCTCCTAGCAATACGTATTCTGCAGTCGCAATTCCTTCAATTATTTCAGATTGTGGAGAGCAGCCATTCCCAGTTGTTGCAACTGGGGGACCACAGACGATGTTGGGCCCCCCTAGTGGTAGCAACCCATTTAACCCTGATCTGTACAGGGTGGGGTCGGTTTTGTCACCTTCCCCAGCAGTGCCCTATCCTTCTACTTCATTTCCATATCCAGTTTTTCCTTTTGGAAGCAATTTTCCTCTGCCCTCAGCCGCTTTTCCAGGCGGGTCAGCAACATATCTTGATTCATCATCTGCCGGGAGGCTTTTTCCTGGGGTTCGTTCCCAGCTGTTAGGACCTGCTGGTGTGGTTTCATCCAATTACCCAAGGCCTTATGTTGTTAATCTTCCTGATGGTAGCAATAACAGTAGCGGTGAAAGCAGTAGGAAGTGGGGAAGACAAGGGCTTGATCTCAATGCAGGGCCTGGAGGTCCAGACTTAGATGGGAGAGATGTGACATCACCTCTTGTCCCGCGGCAACTATCTGTTGCCAGTTCACAAGCCATGGCTGAGGACCAAGCAAGGATGTTCCAGATGCAAGGTGGCACCTTTAAAAGGAAGGAACCCGAGGGAGGGTGGGACGCCTACAGACAGTCCTTGTGGAAATAGGCATGTCTAATTGCAGAATTGGGCGACTCGTGAAAGCTTTGCTTTGAGGATGGGCATTTGCTAACCCCCACGAGGTCATCATCTAAGCTTGTGTGCTTCCGGAGGATGGGCGGTAAGTGAGTTATTTGATGTTGTTCATGGTCTCCGACCCCCTCCTCTTTGATGTATCAGTTGTAATCTTAAAAGATATATGGGTTCTTCAAGCTGTTTGTTCCTTGAATTTGTTAGGCGGACGCGATCTTTGTTTCCGCTTTGTAGATATTCTAACAGTTAGAAAACATACTGTGGTTCCCATACACAATCTTTGGTGCCCCTATCGGTCTTCAATGCATTAGGTATAAACCCAAACCCATCCTCTCCGTTGCCAAACCTCTCCATTTGTCGATTTTTGACCGCTCAAAACAGAAGCTTCTGTGTTTATTTCTCTTTGATCACATATGCAAGCAGATCAACAAATTTTGGAACCTTTGG

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	IWS1

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G48050.2	1	SUO\|'shuttle' in chinese
Arabidopsis thaliana	AT3G48050.1	1	SUO\|'shuttle' in chinese
Arabidopsis thaliana	AT3G48060.1	0.901	BAH domain ;TFIIS helical bundle-like domain
Pyrus communis	PCP000490.1	1	-
Rosa multiflora	Rmu_sc0000735.1_g000008.1	1	-
Fragaria vesca	mrna09457.1	1	BAH domain ;TFIIS helical bundle-like domain
Solanum lycopersicum	Solyc06g071350.2.1	1	BAH domain ;TFIIS helical bundle-like domain
Populus trichocarpa	Potri.015G072800.3	1	BAH domain ;TFIIS helical bundle-like domain
Populus trichocarpa	Potri.012G077500.1	1	BAH domain ;TFIIS helical bundle-like domain
Nicotiana benthamiana	Niben101Scf01463g04006.1	1	BAH domain ;TFIIS helical bundle-like domain LENGTH=1613
Oryza sativa	LOC_Os02g50840.1	1	"BAH domain containing protein, putative, expressed"
Zea mays	GRMZM5G812289_P01	1	-
Zea mays	GRMZM2G162859_P01	0.9	-
Zea mays	AC234158.1_FGP005_0.840		-

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.14	BAH	45	152	1.50E-08
PF08711.7	Med26	360	409	5.10E-13

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.9568
SRR5252888	dormant buds	no	dormant buds(0 month)	18.4784
SRR5252889	dormant buds	no	dormant buds(0 month)	20.3624
SRR5252886	dormant buds	no	dormant buds(1 months)	16.7763
SRR5252887	dormant buds	no	dormant buds(1 months)	13.6357
SRR5252884	dormant buds	no	dormant buds(2 months)	25.1687
SRR5252882	dormant buds	no	dormant buds(3 months)	17.798
SRR5252883	dormant buds	no	dormant buds(3 months)	15.5595
SRR5252880	dormant buds	no	dormant buds(4 months)	17.9076
SRR5252881	dormant buds	no	dormant buds(4 months)	15.8176
SRR5252878	bud break	no	bud break	17.3162
SRR5252879	bud break	no	bud break	12.6142
SRR3744766	flower	no	mature	13.1771
SRR3744767	flower	no	mature	13.423
SRR3744768	flower	no	mature	12.2819
SRR6308190	stigmas	no	open flowers	6.31703
SRR6308181	styles	no	open flowers	4.98089
SRR6308188	filaments	no	open flowers	5.91327
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	11.9329
SRR6308192	pollen	no	open flowers	21.3945
SRR6308191	petals	no	open flowers	3.90387
SRR6308194	sepals	no	open flowers	4.13322
SRR6308193	receptacles	no	open flowers	4.55576
SRR6308189	ovaries	no	open flowers	6.22464
SRR3384922	fruit	no	1 week after full bloom	3.23938
SRR3384921	fruit	no	2 week after full bloom	3.38856
SRR3384920	fruit	no	3 week after full bloom	3.23017
SRR3384919	fruit	no	4 week after full bloom	3.75122
SRR3384923	fruit	no	5 week after full bloom	3.499
SRR3384918	fruit	no	6 week after full bloom	4.25036
SRR3384917	fruit	no	8 week after full bloom	4.21307
SRR3384916	fruit	no	10 week after full bloom	3.04591
SRR3384915	fruit	no	12 week after full bloom	2.04127
SRR3384914	fruit	no	14 week after full bloom	2.71702
SRR3384913	fruit	no	16 week after full bloom	2.5891
SRR3384912	fruit	no	18 week after full bloom	2.68629
SRR3384911	fruit	no	19 week after full bloom	2.82254
SRR3384910	fruit	no	20 week after full bloom	3.96661
SRR768128	whole fruit	no	25 days post anthesis	7.31371
SRR768129	whole fruit	no	35 days post anthesis	5.37842
SRR768130	whole fruit	no	60 days post anthesis	7.47418
SRR768131	whole fruit	no	87 days post anthesis	7.33414
SRR7343308	immature fruit flesh	no	immature	10.1992
SRR7343309	immature fruit flesh	no	immature	10.8089
SRR6320494	ripe fruit flesh	no	mature	7.27907
SRR5405143	ripe fruit peel	no	mature	10.0874
SRR6320572	ripe fruit peel	no	mature	7.31913
SRR7403504	fruit	uninfected	mature	6.24926
SRR7403506	fruit	uninfected	mature	6.23335
SRR7403507	fruit	uninfected	mature	5.91894
SRR7403500	fruit	infected with penicillium expansum	mature	7.10667
SRR7403501	fruit	infected with penicillium expansum	mature	6.56592
SRR7403508	fruit	infected with penicillium expansum	mature	6.38789
SRR7403502	fruit	infected with penicillium expansum	mature	6.50946
SRR7403503	fruit	infected with penicillium expansum	mature	6.18539
SRR7403505	fruit	infected with penicillium expansum	mature	6.63288
SRR1613973	Central seeds	no	20DAPF	4.8766
SRR1613974	Central seeds	no	20DAPF	5.40432
SRR1613975	Central seeds	no	20DAPF	4.60575
SRR1613976	Lateral seeds	no	20DAPF	6.11893
SRR1613977	Lateral seeds	no	20DAPF	5.18452
SRR1613978	Lateral seeds	no	20DAPF	5.57731
SRR3744786	stem	no	mature	11.3606
SRR3744787	stem	no	mature	12.5157
SRR3744772	stem	no	mature	12.4286
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.1802
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.87102
SRR1089478	leaf	Virus-free	plantlets	10.2078
SRR1089477	leaf	ASGV-infected	plantlets	10.0609
SRR767660	leaf	uninfected	fully developed	5.52851
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.6996
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.93444
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.13908
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	8.40289
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	7.18691
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.64163
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.39172
SRR6308182	young leaf	no	immature leaves	6.61491
SRR3744769	leaf	no	mature	13.5429
SRR3744770	leaf	no	mature	14.021
SRR3744771	leaf	no	mature	14.1484
SRR5405145	leaf	no	mature	9.47661
SRR6320561	leaf	no	mature	6.02658