Gene detail

Detail information of MD14G1204700 Annotation

Gene ID	Annotation
MD14G1204700	CCT motif -containing response regulator protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0138

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD14G1204700	mRNA	Chr14	29253601	29257651	+

Sequences

CDS:

MD14G1204700

TTTTCCAACTCATCGGCTGGTGCTATCGTGCGCCGCTGGTGGCCGGTGATCCGAACTTGTAACTCTTTTTAAGTATCAATTCTATCAGCTTCTCTCCCGCGGTCATCTCGAATTCCCAACCGCCCTATAAGCTTGCTCGGAGCCTGCGATTGTGCGGACGGGTTTGTGGTTTGGGGTTTTGACTAAGAAATGGAGTCAACGCTTGGGATTGGGGGTTGGGGACCAGCAAAACCCTGATTTGGGATTCTGATTGGAGCCCTGGAGATGGAGCGGTGAGTATTTTGGTTGGATTTATGGAGGTTTTGTAGGATCGGAGAGTTTGCCTGGGGTTCTTGGTGGATTTTGCTATGGAGCCGAAGGAGCTGAATTTGAACAGAGAGTCTGAAGCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTTTGTGGCGTCGGTGGTGGTGCTGATGGGTTCATCGACAGGAGCAGGGTGAGGATTTTACTCTGCGATAACAACGAGTACAGTTCGGAAGAGGTTTTCACGCTTCTTGTGAAATGCTCTTACCAGGTTATTTCCGTGAAGTCTCCTCGACAAGTGATTGATGCATTGAATGCAGAGGGGCCTGATATTGATCTCATACTTGCCGAAGTTGACCTTCCAATGCGCAAAGGCATGAAAATGTTGAAGTACATCACACGGGATAGAGAGTTAAGGCGCATTCCTGTAATCATGATGTCGGCACAAGATGAGGTCTCTACTGTTGTCAAGTGCTTGAAGCTTGGAGCAGCAGACTATCTTGTAAAGCCTTTACGCACAAATGAGCTTCTGAACTTGTGGACACACATGTGGAGAAGAAGGCGCATGCTTGGGCTAGCAGAGAAGAACCTTATAAATTATGTTGATCTGGTGATATCAGACCCTAGCGGATCTAATACGAACAGTACTACTTTATTCTCGGATGATACAGATGATAAATTGGGCAATCCTGAGACAGGAACCTCAGCTCCCGAGGAAGATAAGTCTACTCCTGTTATGGAGCTTCCAGTCGAGAATATATCAGAATTTCGGCCCGATGTTCCAGGAATAAGTGACCGGCAAACTGGAAAGTTTTTATCTGCCCCAAAGAAGAGCGAACTAAAGATTGGCGTTGGCAAGTCATCTGCCTTCTTTACGTATGTGAAATCAAGCAAACTAAAAATCAATCCTCAGGTGGTTGCACATATTGAAGACATTGCCACTGAAAATTTGAGGATAGAAGAGAAACATGAAGAATGTGTTCACCAAGTGGTTGATGATCCCCAAGTACATGGAAATGGAGAGGCGTGGGAAAGCAACTCACAGGGAGATGACTTGCCGAGCAGTAACAGTATCCCAGATTCTCTTTCTTTGGAGAGGTCTAGTACCCCGTCTGGATCAATGGAACTTCAAAATCAGAGCAGTTTTGAGGAAGACAGATCCTCTCTGGTGCCTGCACATCCAAGAAATGAACCTCAACATGATTTTTCTGGCCTACCTGCCCAAGCCGCCTATCAATATTATATGTCGGGAGCTGTCAATCAAGTTATGATGTCATCATCACCCGAAGTTTATCAAAAGAATCTGCATGACATGCAAAATCATGCTATGATGCCGCAATACAATCATTTTCCACACTGCCCTCCACACCTAAATGGGATGGCTTCGTTCCCCTATTATAGTGTATGCTCGCAACCTGGTCAACAAATGCCGAATGCTCAGCCATGGCCATCATTTGGAAGTTCAGCATCCACTGAAGTGAATCTAAATAAGGTTGACAGAAGGGAGGCAGCATTGATTAAATTTAGGCAAAAAAGAAAGGAGCGCTGTTTTGATAAAAAGATCAGGTATGTAAATAGAAAGAAACTTGCCGAAAGGAGACCTCGTGTGCGGGGACAATTTGTGGGGAAGTTAAATGGTGTAAATGTGGATCTTAACGGCGAGCCTGCTTCTGTTGAAGATGATGAGGAGGAGGAGGATGAAAAGGATGACGAGGAGCTTGCATCAAGGGATTCCTCCCCGGAAGATGGTGCTTCTTGATAATATTACCTATATGGATGAGTGGGGATTTGTGTTGCATGGTTTAATTGAAGTATACTGGGTGCATCGTCGTATTGGTTGGACATTGATCAAGGGTTCAAGCTACTGGTTCTATTTCAGTAATCAAAGATCAGATCATCGTAAAGTATCCCGCTGTCCATCTTCTTGAGTTACAGAATAGCCCAACAGACACTCAGTGTAGAGCTCTTGAGGTCGGGAACCTTTCATCCTTGATTCATCCATGTCCGAAATCCAAACCGGAAATGGGCTCATCTTCCGAATTTTTCTGTCAAGAAGTTTTAGATTTAAACAATGACTTAAACAGGAGAACGGTGTTTTCTCTTCTTGTTAGTATATGGAATTTTATGGTAATCGAGATATCATACTTCTTTTGTTCTGTTTCCTTAATTTTTGTGAAAGTTTTGAAGATTTCTTGTGCCTCTTACCTTCTTTGATGTAAAAAGTATCGTTTGCAGA

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	Pseudo ARR-B

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G61380.1	1	APRR1;AtTOC1;PRR1;TOC1\|TIMING OF CAB EXPRESSION 1;PSEUDO-RESPONSE REGULATOR 1
Prunus persica	Prupe.5G198000.1.p	1	CCT motif -containing response regulator protein
Pyrus communis	PCP016698.1	1	-
Pyrus x bretschneideri	Pbr007273.2	1	-
Rosa multiflora	Rmu_sc0003511.1_g000044.1	1	-
Rubus occidentalis	Ro05_G03280	1	-
Fragaria vesca	mrna26055.1	1	CCT motif -containing response regulator protein
Vitis vinifera	GSVIVT01007965001	1	CCT motif -containing response regulator protein
Solanum lycopersicum	Solyc03g115770.2.1	1	CCT motif -containing response regulator protein
Populus trichocarpa	Potri.015G061900.3	1	CCT motif -containing response regulator protein
Nicotiana benthamiana	Niben101Scf11469g00017.1	1	response regulator 11 LENGTH=521
Oryza sativa	LOC_Os02g40510.1	1	"response regulator receiver domain containing protein, expressed"
Zea mays	GRMZM2G020081_P01	1	PseudoARR-B transcription factor; Two-component response regulator-like PRR1

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function
GO:0000160	phosphorelay signal transduction system	biological_process
GO:0000156	phosphorelay response regulator activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.20	Response_reg	43	154	1.20E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.21849
SRR5252888	dormant buds	no	dormant buds(0 month)	15.0395
SRR5252889	dormant buds	no	dormant buds(0 month)	14.4443
SRR5252886	dormant buds	no	dormant buds(1 months)	13.308
SRR5252887	dormant buds	no	dormant buds(1 months)	12.4083
SRR5252884	dormant buds	no	dormant buds(2 months)	20.3704
SRR5252882	dormant buds	no	dormant buds(3 months)	16.4694
SRR5252883	dormant buds	no	dormant buds(3 months)	14.198
SRR5252880	dormant buds	no	dormant buds(4 months)	17.9624
SRR5252881	dormant buds	no	dormant buds(4 months)	21.2846
SRR5252878	bud break	no	bud break	11.9504
SRR5252879	bud break	no	bud break	9.23021
SRR3744766	flower	no	mature	36.2643
SRR3744767	flower	no	mature	36.6096
SRR3744768	flower	no	mature	37.6589
SRR6308190	stigmas	no	open flowers	10.6653
SRR6308181	styles	no	open flowers	10.9998
SRR6308188	filaments	no	open flowers	10.6097
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	37.7119
SRR6308192	pollen	no	open flowers	1.68169
SRR6308191	petals	no	open flowers	20.7976
SRR6308194	sepals	no	open flowers	11.0578
SRR6308193	receptacles	no	open flowers	13.8931
SRR6308189	ovaries	no	open flowers	10.563
SRR3384922	fruit	no	1 week after full bloom	6.01726
SRR3384921	fruit	no	2 week after full bloom	5.80917
SRR3384920	fruit	no	3 week after full bloom	7.22311
SRR3384919	fruit	no	4 week after full bloom	5.44157
SRR3384923	fruit	no	5 week after full bloom	6.70012
SRR3384918	fruit	no	6 week after full bloom	6.24583
SRR3384917	fruit	no	8 week after full bloom	5.8219
SRR3384916	fruit	no	10 week after full bloom	8.10335
SRR3384915	fruit	no	12 week after full bloom	8.2085
SRR3384914	fruit	no	14 week after full bloom	7.01488
SRR3384913	fruit	no	16 week after full bloom	7.26319
SRR3384912	fruit	no	18 week after full bloom	8.07837
SRR3384911	fruit	no	19 week after full bloom	7.81729
SRR3384910	fruit	no	20 week after full bloom	10.1831
SRR768128	whole fruit	no	25 days post anthesis	11.0583
SRR768129	whole fruit	no	35 days post anthesis	7.4929
SRR768130	whole fruit	no	60 days post anthesis	9.89121
SRR768131	whole fruit	no	87 days post anthesis	11.195
SRR7343308	immature fruit flesh	no	immature	11.7138
SRR7343309	immature fruit flesh	no	immature	10.1512
SRR6320494	ripe fruit flesh	no	mature	17.5228
SRR5405143	ripe fruit peel	no	mature	16.4708
SRR6320572	ripe fruit peel	no	mature	16.5526
SRR7403504	fruit	uninfected	mature	18.6237
SRR7403506	fruit	uninfected	mature	18.489
SRR7403507	fruit	uninfected	mature	19.5033
SRR7403500	fruit	infected with penicillium expansum	mature	26.7307
SRR7403501	fruit	infected with penicillium expansum	mature	30.0282
SRR7403508	fruit	infected with penicillium expansum	mature	27.4963
SRR7403502	fruit	infected with penicillium expansum	mature	29.6462
SRR7403503	fruit	infected with penicillium expansum	mature	27.9318
SRR7403505	fruit	infected with penicillium expansum	mature	30.1133
SRR1613973	Central seeds	no	20DAPF	7.09621
SRR1613974	Central seeds	no	20DAPF	7.88469
SRR1613975	Central seeds	no	20DAPF	7.33621
SRR1613976	Lateral seeds	no	20DAPF	7.54961
SRR1613977	Lateral seeds	no	20DAPF	6.76005
SRR1613978	Lateral seeds	no	20DAPF	7.17649
SRR3744786	stem	no	mature	39.682
SRR3744787	stem	no	mature	38.552
SRR3744772	stem	no	mature	40.5301
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.68821
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.95816
SRR1089478	leaf	Virus-free	plantlets	6.01927
SRR1089477	leaf	ASGV-infected	plantlets	7.87908
SRR767660	leaf	uninfected	fully developed	3.81759
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	12.2827
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.12547
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.28729
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	7.98789
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	8.04648
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	11.7788
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.5449
SRR6308182	young leaf	no	immature leaves	6.77147
SRR3744769	leaf	no	mature	44.9246
SRR3744770	leaf	no	mature	44.8341
SRR3744771	leaf	no	mature	45.2794
SRR5405145	leaf	no	mature	12.9267
SRR6320561	leaf	no	mature	13.3423