Gene detail

Detail information of MD15G1004500 Annotation

Gene ID	Annotation
MD15G1004500	TCP-1/cpn60 chaperonin family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1004500	mRNA	Chr15	270660	275064	+

Sequences

CDS:

MD15G1004500

TTTTGAAAAACCGAGCAACCTAGCGGAGGTATACACCCGGTTCTTCTCACTACACTCTCTTTTACTTGTGTGCTGCCGGTTCAACTTAGATAGAGTGAAAAAACCCTCGACGCCGAAACCAGTTATCTTGGGCGGGATCTAGAGTCTTCAATTCTCCCTTCACCATCTCCGTCTACGCTTTCTCTTCGGTTTTCGTTCGGCCGAAGTTTTTTGATATCTCTATTCCATGGCGGTGGAGAGAATTTTCAAAGATGAAGCTAGTGAGGAGAAAGGAGAGCGCGCCAGACTGGCTTCATTTGTGGGCGCAATGGCAATTGCTGACTTGGTTAAGACAACCTTAGGGCCGAAGGGAATGGATAAAATTTTGCAATCAACAGGAAGAGGACACGAGGTTACTGTTACTAATGATGGGGCCACCATCTTAAAGTCCCTGCATATTGACAATGCAGCTGCTAAAGTTCTTTCAGATATTTCAAAAGTTCAAGATGATGAAGTTGGTGACGGGACAACTTCTGTTGTTGTTTTGGCGGGTGAGCTCTTAAGGGAGGCTGAAAAGCTGGTTGCATCAAAGATTCACCCAATGACAATCATTTCAGGTTATCGGATGGCAGCTGAATGTGCACGTAATGCTTTATTGCAGAAGGTTGTGGATAACAAGGCTGACTCTGAAAAATTTAAGTCGGACCTAATGAAGATCGCAATGACTACTTTGAGCTCCAAAATTCTTTCTCAGGACAAAGAACATTTTGCACAGCTAGCCGTGGATGCTGTGATGCGCCTAAAGGGAAGTACCAACTTAGAGGCTATCCAAATTATAAAGAAGCCCGGTGGATCACTTATAGATTCATTTTTAGATGAAGGATTTATTCTTGACAAGAAAATAGGTCTTGGTCAGCCGAAGCGCATAGAGAATGCAAACATTTTGGTCGCAAACACAGCAATGGACACAGACAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTGATTCAATGGCGAAGGTTGCTGAAATTGAAGGGGCTGAGAAAGATAAAATGAGAGAAAAAGTGCAGAAGATCATAGGTCATGGAATTAACTGTTTCGTTAACAGACAGTTGATCTACAATTTCCCAGAAGAACTCTTTGCAGATGCTGGAATACTTGCAATTGAGCATGCTGATTTTGATGGCATTGAGCGTTTGGCCTTAGTTACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCCGTTAAGCTTGGGCACTGCAAGCTCATTGAGGAAATTATGATTGGTGAGGACAAGTTGATCCATTTTTCTGGAGTTGAACTGGGTCAGGCTTGCACAATAGTGCTGAGAGGCGCGAGCCATCACGTTCTTGACGAGGCTGAAAGGTCTCTGCATGATGCCTTGTGTGTGCTGTCTCAGACGGTCAATGACAGCAGAGTTTTGCTTGGAGGTGGATGGCCTGAGATGATAATGGCAAAGGAAGTTGATGAGCTGGCCAGGAAAACGCCTGGAAAGAAATCTCATGCTATTGAAGCTTTCTCGCGGGCACTCTTGGCCATTCCTACTATCATTGCTGACAATGCCGGTTTGGACAGTGCTGAGTTGATTGCAAAGCTACGTGCAGAGCACCAGAAAGAAGGATGCACTTCTGGGATTGATGTCATCTCTGGAACAGTAGGAGACATGGCAGAACGAGGGATATCAGAAGCGTTTAAAGTTAAGCAGGCCGTCCTGCTCTCTGCAACAGAGGCTGCAGAGATGATTCTTAGAGTTGACGAGATCATCACCTGTGCACCAAGGAAGAGAGAAGATAGAATGTGATTTGCCAGAAACAGATGTATTTTTAATGTCTGCCCTTTGTCTTGGCAATATGTGGCTTTGTATGTTGATGTTATTGTTAGATGGATCAAAGTTTTGGAAAAATGTGTTTTCGATGTGGCCGGGACTGTAACTGAGGACTTATTTTGAATTTATCTTTGAGTGGATGTTTCTTATTTGGTCGGTCATCTTGCTTGGACCACTGAATTTATGTTGTTGATTTGCTGTCGTGGATATTGGCATGGGCTCGTGAAATCGTAAGAGATCCAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G20890.1	1	TCP-1/cpn60 chaperonin family protein
Pyrus communis	PCP025756.1	1	-
Pyrus x bretschneideri	Pbr005771.1	1	-
Rosa multiflora	Rmu_sc0004644.1_g000010.1	1	-
Rubus occidentalis	Ro02_G10410	1	-
Fragaria vesca	mrna08607.1	1	TCP-1/cpn60 chaperonin family protein
Vitis vinifera	GSVIVT01008708001	1	TCP-1/cpn60 chaperonin family protein
Solanum lycopersicum	Solyc11g069000.1.1	1	TCP-1/cpn60 chaperonin family protein
Populus trichocarpa	Potri.001G341100.3	1	TCP-1/cpn60 chaperonin family protein
Nicotiana benthamiana	Niben101Scf05890g02025.1	1	T-complex protein 1 subunit beta (Fragments)
Oryza sativa	LOC_Os03g42220.1	1	"T-complex protein, putative, expressed"
Oryza sativa	LOC_Os05g48290.3	1	"T-complex protein, putative, expressed"
Zea mays	GRMZM2G058276_P01	1	Putative TCP-1/cpn60 chaperonin family protein

Gene Ontology

GO term	Description	Category
GO:0006457	protein folding	biological_process
GO:0044267	cellular protein metabolic process	biological_process
GO:0051082	unfolded protein binding	molecular_function
GO:0005524	ATP binding	molecular_function

KEGG

KO	Description	Enzyme
K09494	T-complex protein 1 subunit beta	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	17.3373
SRR5252888	dormant buds	no	dormant buds(0 month)	31.3677
SRR5252889	dormant buds	no	dormant buds(0 month)	35.7413
SRR5252886	dormant buds	no	dormant buds(1 months)	27.168
SRR5252887	dormant buds	no	dormant buds(1 months)	26.7354
SRR5252884	dormant buds	no	dormant buds(2 months)	30.6561
SRR5252882	dormant buds	no	dormant buds(3 months)	30.832
SRR5252883	dormant buds	no	dormant buds(3 months)	27.1574
SRR5252880	dormant buds	no	dormant buds(4 months)	41.7967
SRR5252881	dormant buds	no	dormant buds(4 months)	43.7836
SRR5252878	bud break	no	bud break	32.0957
SRR5252879	bud break	no	bud break	56.5957
SRR3744766	flower	no	mature	10.0745
SRR3744767	flower	no	mature	9.10319
SRR3744768	flower	no	mature	9.50217
SRR6308190	stigmas	no	open flowers	10.038
SRR6308181	styles	no	open flowers	10.4016
SRR6308188	filaments	no	open flowers	18.6886
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.8238
SRR6308192	pollen	no	open flowers	4.13705
SRR6308191	petals	no	open flowers	14.5526
SRR6308194	sepals	no	open flowers	14.1758
SRR6308193	receptacles	no	open flowers	22.3789
SRR6308189	ovaries	no	open flowers	18.2389
SRR3384922	fruit	no	1 week after full bloom	26.1371
SRR3384921	fruit	no	2 week after full bloom	27.1636
SRR3384920	fruit	no	3 week after full bloom	22.5043
SRR3384919	fruit	no	4 week after full bloom	21.7084
SRR3384923	fruit	no	5 week after full bloom	20.9802
SRR3384918	fruit	no	6 week after full bloom	18.1985
SRR3384917	fruit	no	8 week after full bloom	21.796
SRR3384916	fruit	no	10 week after full bloom	22.8831
SRR3384915	fruit	no	12 week after full bloom	27.1165
SRR3384914	fruit	no	14 week after full bloom	21.7149
SRR3384913	fruit	no	16 week after full bloom	22.8294
SRR3384912	fruit	no	18 week after full bloom	18.7129
SRR3384911	fruit	no	19 week after full bloom	20.8894
SRR3384910	fruit	no	20 week after full bloom	20.1611
SRR768128	whole fruit	no	25 days post anthesis	26.2754
SRR768129	whole fruit	no	35 days post anthesis	23.8154
SRR768130	whole fruit	no	60 days post anthesis	19.4753
SRR768131	whole fruit	no	87 days post anthesis	23.8296
SRR7343308	immature fruit flesh	no	immature	20.1222
SRR7343309	immature fruit flesh	no	immature	20.3098
SRR6320494	ripe fruit flesh	no	mature	19.5254
SRR5405143	ripe fruit peel	no	mature	23.0933
SRR6320572	ripe fruit peel	no	mature	21.3256
SRR7403504	fruit	uninfected	mature	18.1764
SRR7403506	fruit	uninfected	mature	17.7889
SRR7403507	fruit	uninfected	mature	18.1319
SRR7403500	fruit	infected with penicillium expansum	mature	1.84226
SRR7403501	fruit	infected with penicillium expansum	mature	2.39214
SRR7403508	fruit	infected with penicillium expansum	mature	3.51054
SRR7403502	fruit	infected with penicillium expansum	mature	3.42841
SRR7403503	fruit	infected with penicillium expansum	mature	3.82926
SRR7403505	fruit	infected with penicillium expansum	mature	3.48985
SRR1613973	Central seeds	no	20DAPF	39.2133
SRR1613974	Central seeds	no	20DAPF	39.752
SRR1613975	Central seeds	no	20DAPF	33.7813
SRR1613976	Lateral seeds	no	20DAPF	30.6185
SRR1613977	Lateral seeds	no	20DAPF	34.0758
SRR1613978	Lateral seeds	no	20DAPF	35.5197
SRR3744786	stem	no	mature	14.749
SRR3744787	stem	no	mature	14.243
SRR3744772	stem	no	mature	15.165
SRX765691	seedling shoot apex	no	4-6 week old seedling	32.7323
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	35.4765
SRR1089478	leaf	Virus-free	plantlets	21.0742
SRR1089477	leaf	ASGV-infected	plantlets	21.0775
SRR767660	leaf	uninfected	fully developed	12.2182
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	17.3182
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	14.5887
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.05845
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	15.7173
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	7.44852
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.77
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	11.2836
SRR6308182	young leaf	no	immature leaves	35.9796
SRR3744769	leaf	no	mature	12.2531
SRR3744770	leaf	no	mature	11.2172
SRR3744771	leaf	no	mature	12.5136
SRR5405145	leaf	no	mature	8.51165
SRR6320561	leaf	no	mature	8.10459